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Binary Alignment Map (BAM) is the comprehensive raw data of genome sequencing; [1] it consists of the lossless, compressed binary representation of the Sequence Alignment Map-files. [2] [3] BAM is the compressed binary representation of SAM (Sequence Alignment Map), a compact and index-able representation of nucleotide sequence alignments. [4]
SAMtools makes it possible to work directly with a compressed BAM file, without having to uncompress the whole file. Additionally, since the format for a SAM/BAM file is somewhat complex - containing reads, references, alignments, quality information, and user-specified annotations - SAMtools reduces the effort needed to use SAM/BAM files by ...
Raw PacBio subreads use the same convention but typically assign a placeholder base quality (Q0) to all bases in the read. [7] Oxford Nanopore Duplex reads, called using the dorado basecaller are typically stored in SAM/BAM format. After changing to a 16-bit internal quality representation, the reported base quality limit is q50 (S). [8]
The SAM format consists of a header and an alignment section. [1] The binary equivalent of a SAM file is a Binary Alignment Map (BAM) file, which stores the same data in a compressed binary representation. [4] SAM files can be analysed and edited with the software SAMtools. [1] The header section must be prior to the alignment section if it is ...
Linux, macOS, Windows Fedora: GNOME Disks: Gnome disks contributors GPL-2.0-or-later: Yes No Linux Anything LinuxLive USB Creator (LiLi) Thibaut Lauzière GNU GPL v3: No No Windows Linux remastersys: Tony Brijeski GNU GPL v2: No [2] No Debian, Linux Mint, Ubuntu Debian and derivatives Rufus: Pete Batard GNU GPL v3: Yes No Windows Anything ...
Rufus was originally designed [5] as a modern open source replacement for the HP USB Disk Storage Format Tool for Windows, [6] which was primarily used to create DOS bootable USB flash drives. The first official release of Rufus, version 1.0.3 (earlier versions were internal/alpha only [ 7 ] ), was released on December 4, 2011, with originally ...
Compressed Reference-oriented Alignment Map (CRAM) is a compressed columnar file format for storing biological sequences aligned to a reference sequence, initially devised by Markus Hsi-Yang Fritz et al. [1] CRAM was designed to be an efficient reference-based alternative to the Sequence Alignment Map (SAM) and Binary Alignment Map (BAM) file ...
It is used for all USB protocols and for Thunderbolt (3 and later), DisplayPort (1.2 and later), and others. Developed at roughly the same time as the USB 3.1 specification, but distinct from it, the USB-C Specification 1.0 was finalized in August 2014 [26] and defines a new small reversible-plug connector for USB devices. [27]