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Radius of gyration (in polymer science)(, unit: nm or SI unit: m): For a macromolecule composed of mass elements, of masses , =1,2,…,, located at fixed distances from the centre of mass, the radius of gyration is the square-root of the mass average of over all mass elements, i.e.,
It is often useful to give the gyrofrequency a sign with the definition = or express it in units of hertz with =. For electrons, this frequency can be reduced to , = (/).. In cgs-units the gyroradius = | | and the corresponding gyrofrequency = | | include a factor , that is the velocity of light, because the magnetic field is expressed in units [] = / /.
MD simulation of the full satellite tobacco mosaic virus (STMV) (2006, Size: 1 million atoms, Simulation time: 50 ns, program: NAMD) This virus is a small, icosahedral plant virus that worsens the symptoms of infection by Tobacco Mosaic Virus (TMV). Molecular dynamics simulations were used to probe the mechanisms of viral assembly.
For this case the radius of gyration is approximated using Flory's mean field approach which yields a scaling for the radius of gyration of: R g ∼ N ν {\displaystyle R_{g}\sim N^{\nu }} , where R g {\displaystyle R_{g}} is the radius of gyration of the polymer, N {\displaystyle N} is the number of bond segments (equal to the degree of ...
A quantity frequently used in polymer physics is the radius of gyration: = It is worth noting that the above average end-to-end distance, which in the case of this simple model is also the typical amplitude of the system's fluctuations, becomes negligible compared to the total unfolded length of the polymer N l {\displaystyle N\,l} at the ...
In section 5.5.5 of his book, Allen [4] compares the reaction field with other methods, focusing on the simulation of the Stockmayer system (the simplest model for a dipolar fluid, such as water). The work of Adams, et al. (1979) showed that the reaction field produces results with thermodynamic quantities (volume, pressure and temperature ...
A real world molecular system is unlikely to be present in vacuum. Jostling of solvent or air molecules causes friction, and the occasional high velocity collision will perturb the system. Langevin dynamics attempts to extend molecular dynamics to allow for these effects.
As described above, the radius of gyration, R g, and the second virial coefficient, A 2, are also calculated from this equation. The refractive index increment dn/dc characterizes the change of the refractive index n with the concentration c and can be measured with a differential refractometer.