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  2. Root mean square deviation - Wikipedia

    en.wikipedia.org/wiki/Root_mean_square_deviation

    In bioinformatics, the root mean square deviation of atomic positions is the measure of the average distance between the atoms of superimposed proteins. In structure based drug design, the RMSD is a measure of the difference between a crystal conformation of the ligand conformation and a docking prediction.

  3. Root mean square - Wikipedia

    en.wikipedia.org/wiki/Root_mean_square

    In mathematics, the root mean square (abbrev. RMS, RMS or rms) of a set of numbers is the square root of the set's mean square. [1] Given a set , its RMS is denoted as either or . The RMS is also known as the quadratic mean (denoted ), [2][3] a special case of the generalized mean. The RMS of a continuous function is denoted and can be defined ...

  4. Mean squared error - Wikipedia

    en.wikipedia.org/wiki/Mean_squared_error

    The MSE either assesses the quality of a predictor (i.e., a function mapping arbitrary inputs to a sample of values of some random variable), or of an estimator (i.e., a mathematical function mapping a sample of data to an estimate of a parameter of the population from which the data is sampled).

  5. Standard error - Wikipedia

    en.wikipedia.org/wiki/Standard_error

    Toggle the table of contents ... around the population mean. In regression analysis, the term "standard error" refers either to the square root of the reduced chi ...

  6. Mean square - Wikipedia

    en.wikipedia.org/wiki/Mean_square

    Mean square. In mathematics and its applications, the mean square is normally defined as the arithmetic mean of the squares of a set of numbers or of a random variable. [1] It may also be defined as the arithmetic mean of the squares of the deviations between a set of numbers and a reference value (e.g., may be a mean or an assumed mean of the ...

  7. Root mean square deviation of atomic positions - Wikipedia

    en.wikipedia.org/wiki/Root_mean_square_deviation...

    In bioinformatics, the root mean square deviation of atomic positions, or simply root mean square deviation (RMSD), is the measure of the average distance between the atoms (usually the backbone atoms) of superimposed molecules. [1] In the study of globular protein conformations, one customarily measures the similarity in three-dimensional ...

  8. Propagation of uncertainty - Wikipedia

    en.wikipedia.org/wiki/Propagation_of_uncertainty

    Propagation of uncertainty. In statistics, propagation of uncertainty (or propagation of error) is the effect of variables ' uncertainties (or errors, more specifically random errors) on the uncertainty of a function based on them. When the variables are the values of experimental measurements they have uncertainties due to measurement ...

  9. Errors and residuals - Wikipedia

    en.wikipedia.org/wiki/Errors_and_residuals

    Since this is a biased estimate of the variance of the unobserved errors, the bias is removed by dividing the sum of the squared residuals by df = n − p − 1, instead of n, where df is the number of degrees of freedom (n minus the number of parameters (excluding the intercept) p being estimated - 1). This forms an unbiased estimate of the ...