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Download as PDF; Printable version; In other projects Wikidata item ... DECIPHER is a software that can be used to decipher and manage biological sequences ...
Name Description Knots [Note 1]Links References trRosettaRNA: trRosettaRNA is an algorithm for automated prediction of RNA 3D structure. It builds the RNA structure by Rosetta energy minimization, with deep learning restraints from a transformer network (RNAformer). trRosettaRNA has been validated in blind tests, including CASP15 and RNA-Puzzles, which suggests that the automated predictions ...
DECIPHER is a web-based resource and database of genomic variation data from analysis of patient DNA. [ 1 ] [ 2 ] [ 3 ] It documents submicroscopic chromosome abnormalities ( microdeletions and duplications ) and pathogenic sequence variants (single nucleotide variants - SNVs, Insertions, Deletions, InDels), from over 25000 patients and maps ...
John Henry Holland was born on February 2, 1929 in Fort Wayne, Indiana, the elder child of [3] son of Gustave A. Holland (b. July 24, 1896, Russian Poland) and Mildred P. Gfroerer (b.
The read alignments are sorted using SAMtools, after which variant callers such as GATK [20] are used to identify differences compared to the reference sequence. The choice of variant calling tool depends heavily on the sequencing technology used, so GATK is often used when working with short reads, while long read sequences require tools like ...
PCAHIER, [17] another binning algorithm developed by the Georgia Institute of Technology., employs n-mer oligonucleotide frequencies as the features and adopts a hierarchical classifier (PCAHIER) for binning short metagenomic fragments. The principal component analysis was used to reduce the high dimensionality of the feature space.
Genomic browsers can be divided into web-based genomic browsers and stand-alone genomic browsers. The former use information from databases and can be classified into multiple-species (integrate sequence and annotations of multiple organisms and promote cross-species comparative analysis) and species-specific (focus on one organism and the ...
Schematic overview of the modular structure underlying procedures for gene set enrichment analysis. Gene set enrichment analysis (GSEA) (also called functional enrichment analysis or pathway enrichment analysis) is a method to identify classes of genes or proteins that are over-represented in a large set of genes or proteins, and may have an association with different phenotypes (e.g ...