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samtools view -h -b sample_sorted.bam "chr1:10-13" > tiny_sorted.bam. Extract the same reads as above, but instead of displaying them, writes them to a new bam file, tiny_sorted.bam. The -b option makes the output compressed and the -h option causes the SAM headers to be output also.
Binary Alignment Map (BAM) is the comprehensive raw data of genome sequencing; [1] it consists of the lossless, compressed binary representation of the Sequence Alignment Map-files. [ 2 ] [ 3 ] BAM is the compressed binary representation of SAM (Sequence Alignment Map), a compact and index-able representation of nucleotide sequence alignments ...
NTBackup (also known as Windows Backup [1]: 20.1 and Backup Utility [1]: 20.4 ) is the first built-in backup utility of the Windows NT family. It was introduced with Windows NT 3.51 . NTBackup comprises a GUI ( wizard-style ) and a command-line utility to create, customize, and manage backups.
Backup and Restore [1] (formerly Backup and Restore Center [2]) is the primary backup component of Windows Vista and Windows 7. It can create file and folder backups, as well as system images backups, to be used for recovery in the event of data corruption , hard disk drive failure , or malware infection.
Windows 10: Command Prompt: Text-based shell (command line interpreter) that provides a command line interface to the operating system Windows NT 3.1: Windows PowerShell: Command-line shell and scripting framework. Windows XP: Windows Shell: The most visible and recognizable aspect of Microsoft Windows.
Robocopy is a command-line file transfer utility for Microsoft Windows.Robocopy is functionally more comprehensive than the COPY command and XCOPY, but replaces neither.. Created by Kevin Allen [2] and first released as part of the Windows NT 4.0 Resource Kit, it has been a standard feature of Windows since Windows Vista and Windows Serv
The handling of file input/outputs is also a mix: when a list of file names is specified on the command line, they are taken as shell globs for file input or listing (tar-like); otherwise pax takes the cpio-style behavior of using the standard input for a file list. Finally, pax supports reading/writing to a named archive file using tar's -f ...
Free and open-source software portal; Unison is a file synchronization tool for Windows and various Unix-like systems (including macOS and Linux). [3] It allows two replicas of a collection of files and directories to be stored on different hosts (or different disks on the same host), modified separately, and then brought up to date by propagating the changes in each replica to the other.