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samtools view -h -b sample_sorted.bam "chr1:10-13" > tiny_sorted.bam. Extract the same reads as above, but instead of displaying them, writes them to a new bam file, tiny_sorted.bam. The -b option makes the output compressed and the -h option causes the SAM headers to be output also.
Binary Alignment Map (BAM) is the comprehensive raw data of genome sequencing; [1] it consists of the lossless, compressed binary representation of the Sequence Alignment Map-files. [ 2 ] [ 3 ] BAM is the compressed binary representation of SAM (Sequence Alignment Map), a compact and index-able representation of nucleotide sequence alignments ...
NTBackup (also known as Windows Backup [1]: 20.1 and Backup Utility [1]: 20.4 ) is the first built-in backup utility of the Windows NT family. It was introduced with Windows NT 3.51 . NTBackup comprises a GUI ( wizard-style ) and a command-line utility to create, customize, and manage backups.
Backup and Restore [1] (formerly Backup and Restore Center [2]) is the primary backup component of Windows Vista and Windows 7. It can create file and folder backups, as well as system images backups, to be used for recovery in the event of data corruption , hard disk drive failure , or malware infection.
The binary equivalent of a SAM file is a Binary Alignment Map (BAM) file, which stores the same data in a compressed binary representation. [4] SAM files can be analysed and edited with the software SAMtools. [1] The header section must be prior to the alignment section if it is present.
Changes made to the command line environment after SetLocal commands are local to the batch file. EndLocal command restores the previous settings. [17] The Call command allows subroutines within batch file. The Call command in COMMAND.COM only supports calling external batch files. File name parser extensions to the Set command are comparable ...
Robocopy is a command-line file transfer utility for Microsoft Windows.Robocopy is functionally more comprehensive than the COPY command and XCOPY, but replaces neither.. Created by Kevin Allen [2] and first released as part of the Windows NT 4.0 Resource Kit, it has been a standard feature of Windows since Windows Vista and Windows Serv
Shadow Copy (also known as Volume Snapshot Service, [1] Volume Shadow Copy Service [2] or VSS [2]) is a technology included in Microsoft Windows that can create backup copies or snapshots of computer files or volumes, even when they are in use.