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  2. Conserved signature indels - Wikipedia

    en.wikipedia.org/wiki/Conserved_signature_indels

    Conserved signature inserts and deletions (CSIs) in protein sequences provide an important category of molecular markers for understanding phylogenetic relationships. [1] [2] CSIs, brought about by rare genetic changes, provide useful phylogenetic markers that are generally of defined size and they are flanked on both sides by conserved regions to ensure their reliability.

  3. List of RNA-Seq bioinformatics tools - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA-Seq...

    This classification is then taken into account for the different data views and all supported automatic analysis functions. RNASeqExpressionBrowser is a web-based tool which provides means for the search and visualization of RNA-seq expression data (e.g. based on sequence-information or domain annotations).

  4. NodeXL - Wikipedia

    en.wikipedia.org/wiki/NodeXL

    NodeXL integrates into Microsoft Excel 2007, 2010, 2013, 2016, 2019 and 365 and opens as a workbook with a variety of worksheets containing the elements of a graph structure such as edges and nodes. NodeXL can also import a variety of graph formats such as edgelists, adjacency matrices, GraphML , UCINet .dl, and Pajek .net.

  5. Sequence alignment - Wikipedia

    en.wikipedia.org/wiki/Sequence_alignment

    Motif finding, also known as profile analysis, constructs global multiple sequence alignments that attempt to align short conserved sequence motifs among the sequences in the query set. This is usually done by first constructing a general global multiple sequence alignment, after which the highly conserved regions are isolated and used to ...

  6. Multiple sequence alignment - Wikipedia

    en.wikipedia.org/wiki/Multiple_sequence_alignment

    Motif finding, also known as profile analysis, is a method of locating sequence motifs in global MSAs that is both a means of producing a better MSA and a means of producing a scoring matrix for use in searching other sequences for similar motifs. A variety of methods for isolating the motifs have been developed, but all are based on ...

  7. Power graph analysis - Wikipedia

    en.wikipedia.org/wiki/Power_graph_analysis

    The main difference between modular decomposition and power graph analysis is the emphasis of power graph analysis in decomposing graphs not only using modules of nodes but also modules of edges (cliques, bicliques). Indeed, power graph analysis can be seen as a loss-less simultaneous clustering of both nodes and edges.

  8. Molecular-weight size marker - Wikipedia

    en.wikipedia.org/wiki/Molecular-weight_size_marker

    There are two common methods in which to construct a DNA molecular-weight size marker. [3] One such method employs the technique of partial ligation. [3] DNA ligation is the process by which linear DNA pieces are connected to each other via covalent bonds; more specifically, these bonds are phosphodiester bonds. [4]

  9. Gene set enrichment analysis - Wikipedia

    en.wikipedia.org/wiki/Gene_set_enrichment_analysis

    Schematic overview of the modular structure underlying procedures for gene set enrichment analysis. Gene set enrichment analysis (GSEA) (also called functional enrichment analysis or pathway enrichment analysis) is a method to identify classes of genes or proteins that are over-represented in a large set of genes or proteins, and may have an association with different phenotypes (e.g ...