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  2. Metabolic network modelling - Wikipedia

    en.wikipedia.org/wiki/Metabolic_network_modelling

    Kyoto Encyclopedia of Genes and Genomes : a bioinformatics database containing information on genes, proteins, reactions, and pathways. The ‘KEGG Organisms’ section, which is divided into eukaryotes and prokaryotes, encompasses many organisms for which gene and DNA information can be searched by typing in the enzyme of choice.

  3. KEGG - Wikipedia

    en.wikipedia.org/wiki/KEGG

    KEGG (Kyoto Encyclopedia of Genes and Genomes) is a collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances.KEGG is utilized for bioinformatics research and education, including data analysis in genomics, metagenomics, metabolomics and other omics studies, modeling and simulation in systems biology, and translational research in drug development.

  4. Pathway analysis - Wikipedia

    en.wikipedia.org/wiki/Pathway_analysis

    Pathway resources and types of pathway analysis using databases like KEGG, Reactome and WikiPathways. [1]Pathway is the term from molecular biology for a curated schematic representation of a well characterized segment of the molecular physiological machinery, such as a metabolic pathway describing an enzymatic process within a cell or tissue or a signaling pathway model representing a ...

  5. ConsensusPathDB - Wikipedia

    en.wikipedia.org/wiki/ConsensusPathDB

    Using the web-interface of the database, one can perform overrepresentation analysis, based on biochemical pathways or on neighbourhood-based entity sets (NESTs) that constitute sub-networks of the overall interaction network containing all physical entities around a central one within a "radius" (number of interactions from the center).

  6. Metabolomic Pathway Analysis - Wikipedia

    en.wikipedia.org/wiki/Metabolomic_Pathway_Analysis

    To simplify viewing and navigation on the server, and to assist with the topological analyses, all the KEGG pathways in MetPA are presented as a network with metabolites serving as nodes and reactions as edges. MetPA provides an extensive tutorial explaining how to upload data and how interpret its output.

  7. List of biological databases - Wikipedia

    en.wikipedia.org/wiki/List_of_biological_databases

    KEGG PATHWAY Database (Univ. of Kyoto) MANET database (University of Illinois) Reactome: navigable map of human biological pathways, ranging from metabolic processes to hormonal signalling (Ontario Institute for Cancer Research, European Bioinformatics Institute, NYU Langone Medical Center, Cold Spring Harbor Laboratory)

  8. Biological pathway - Wikipedia

    en.wikipedia.org/wiki/Biological_pathway

    Such a pathway can trigger the assembly of new molecules, such as a fat or protein. Pathways can also turn genes on and off, or spur a cell to move. [1] Some of the most common biological pathways are involved in metabolism, the regulation of gene expression and the transmission of signals. Pathways play a key role in advanced studies of genomics.

  9. Biochemical cascade - Wikipedia

    en.wikipedia.org/wiki/Biochemical_cascade

    The KEGG PATHWAY database is a collection of manually drawn pathway maps for metabolism, genetic information processing, environmental information processing such as signal transduction, ligand–receptor interaction and cell communication, various other cellular processes and human diseases, all based on extensive survey of published literature.

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