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Eclipse Deeplearning4j is a programming library written in Java for the Java virtual machine (JVM). [ 2 ] [ 3 ] It is a framework with wide support for deep learning algorithms. [ 4 ] Deeplearning4j includes implementations of the restricted Boltzmann machine , deep belief net , deep autoencoder, stacked denoising autoencoder and recursive ...
Shannon's diagram of a general communications system, showing the process by which a message sent becomes the message received (possibly corrupted by noise). seq2seq is an approach to machine translation (or more generally, sequence transduction) with roots in information theory, where communication is understood as an encode-transmit-decode process, and machine translation can be studied as a ...
Keras is an open-source library that provides a Python interface for artificial neural networks. Keras was first independent software, then integrated into the TensorFlow library , and later supporting more.
Eclipse Modeling Framework (EMF) is an Eclipse-based modeling framework and code generation facility for building tools and other applications based on a structured data model.
Accurately performs gapped alignment of sequence data obtained from next-generation sequencing machines (specifically of Solexa-Illumina) back to a genome of any size. Includes adaptor trimming, SNP calling and Bisulfite sequence analysis. Yes, also supports Illumina *_int.txt and *_prb.txt files with all 4 quality scores for each base
The Eclipse Web Tools Platform (WTP) project is an extension of the Eclipse platform with tools for developing Web and Java EE applications. It includes source and graphical editors for a variety of languages, wizards and built-in applications to simplify development, and tools and APIs to support deploying, running, and testing apps.
Reverse Complement will be used in situations where the complements may need to be reversed in a sequence. [6] Search Menu consists of Find, Find Next, Find Previous, Next N, Find in File, and DO BLAST Search. The Find, Find Next, and Find Previous are used to find occurrences in certain sections of a query sequence.
Whole genome shotgun sequencing is another method of genome sequencing that does not require a library of high-capacity vectors. Rather, it uses computer algorithms to assemble short sequence reads to cover the entire genome. Genomic libraries are often used in combination with whole genome shotgun sequencing for this reason.