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2. List of genetic engineering software - Wikipedia

   en.wikipedia.org/wiki/List_of_genetic...

   Agilent Technologies RFLP Decoder Software, Fish Species; Applied Biosystems GeneMapper; Joint BioEnergy Institute j5; CLC bio CLC DNA Workbench Software; CLC bio CLC Free Workbench Software; CLC bio CLC Sequence Viewer; CLC bio Protein Workbench Software; DNASTAR Lasergene; Geneious; LabVantage Solutions Inc. LabVantage Sapphire; LabVantage ...

3. List of open-source bioinformatics software - Wikipedia

   en.wikipedia.org/wiki/List_of_open-source...

   Centralized web application that provides data format transformations and facilitates connections with other bioinformatics tools Web browser: LGPL: Broad Institute, collaborative project GENtle: An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files Linux, macOS, Windows: GPL: Magnus Manske: gget

4. DNADynamo - Wikipedia

   en.wikipedia.org/wiki/DNADynamo

   DNADynamo is a general purpose DNA and Protein sequence analysis package that can carry out most of the functions required by a standard research molecular biology laboratory DNA and Protein Sequence viewing, editing and annotating; Contig assembly and chromatogram editing including comparison to a reference sequence to identify mutations

5. List of sequence alignment software - Wikipedia

   en.wikipedia.org/wiki/List_of_sequence_alignment...

   Software to align DNA, RNA, protein, or DNA + protein sequences via pairwise and multiple sequence alignment algorithms including MUSCLE, Mauve, MAFFT, Clustal Omega, Jotun Hein, Wilbur-Lipman, Martinez Needleman-Wunsch, Lipman-Pearson and Dotplot analysis. Both: Both: DNASTAR: 1993-2016 MUMmer suffix tree based: Nucleotide: Global: S. Kurtz et ...

6. List of gene prediction software - Wikipedia

   en.wikipedia.org/wiki/List_of_gene_prediction...

   A tool to annotate phage genomes. Phages [43] SplicePredictor Method to identify potential splice sites in (plant) pre-mRNA by sequence inspection using Bayesian statistical models: Eukaryotes [44] VEIL Hidden Markov model to find genes in vertebrate DNA Server: Eukaryotes [45]

7. SAMtools - Wikipedia

   en.wikipedia.org/wiki/SAMtools

   SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM (Sequence Alignment/Map), BAM (Binary Alignment/Map) and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA.

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9. List of alignment visualization software - Wikipedia

   en.wikipedia.org/wiki/List_of_alignment...

   This page is a subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: Aid general understanding of large-scale DNA or protein alignments; Visualize alignments for figures and publication; Manually edit and curate automatically generated alignments; Analysis in depth