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The BMRB encourages depositors to validate their NMR data before deposition, using one of the validation tools available at the BMRB site, to check for inconsistencies and errors. . [16] Once the data is deposited, it is checked for completeness, consistency and annotated, links to other databases are added and a BMRB accession number is generated.
Protein chemical shift re-referencing is a post-assignment process of adjusting the assigned NMR chemical shifts to match IUPAC and BMRB recommended standards in protein chemical shift referencing. In NMR chemical shifts are normally referenced to an internal standard that is dissolved in the NMR sample.
The Biological Magnetic Resonance Data Bank (BioMagResBank or BMRB) is sponsored by the Department of Biochemistry at the University of Wisconsin–Madison; it is dedicated to Proteins, Peptides, Nucleic Acids, and other Biomolecules. It stores a large variety of raw NMR data.
Biological Magnetic Resonance Data Bank (BMRB) Electron Microscopy Data Bank (EMDB). The wwPDB was founded in 2003 by RCSB PDB (USA), PDBe (Europe) and PDBj (Japan). In 2006 BMRB (USA) joined the wwPDB. EMDB (UK) joined in 2021. Each member's site can accept structural data and process the data. The processed data is sent to the "archive keeper".
In a recent study, [11] a chemical shift re-referencing program (PANAV) was run on a total of 2421 BMRB entries that had a sufficient proportion of (>80%) of assigned chemical shifts to perform a robust chemical shift reference correction. A total of 243 entries were found with 13Cα shifts offset by more than 1.0 ppm, 238 entries with 13Cβ ...
BMRB Biological Magnetic Resonance Data Bank University of Wisconsin biological molecules including ligands, cofactors, peptides, saccharides NMR spectroscopy "BMRB". BRENDA Technical University of Braunschweig: enzymes ligands "BRENDA". Carotenoids Database carotenoids CA "Carotenoids". 1195 CCCBDB
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Global access to the data is provided by the websites of the wwPDB member organisations (PDBe, [3] PDBj, [4] RCSB PDB, [5] and BMRB [6]). The PDB is a key in areas of structural biology, such as structural genomics. Most major scientific journals and some funding agencies now require scientists to submit their structure data to the PDB.