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  2. List of RNA-Seq bioinformatics tools - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA-Seq...

    recursiveCorPlot Correlation based clustering for RNA-seq data (+ ggplot corrplot-like interface - R-package: recursiveCorPlot). [66] RNAeXpress Can be run with Java GUI or command line on Mac, Windows, and Linux. It can be configured to perform read counting, feature detection or GTF comparison on mapped rnaseq data.

  3. Bioconductor - Wikipedia

    en.wikipedia.org/wiki/Bioconductor

    Each Bioconductor package contains at least one vignette, which is a document that provides a textual, task-oriented description of the package's functionality. These vignettes come in several forms. Many are simple "How-to"s that are designed to demonstrate how a particular task can be accomplished with that package's software. Others provide ...

  4. R package - Wikipedia

    en.wikipedia.org/wiki/R_package

    The group of packages strives to provide a cohesive collection of functions to deal with common data science tasks, including data import, cleaning, transformation and visualisation (notably with the ggplot2 package). The R Infrastructure packages [31] support coding and the development of R packages and as of 2021-05-04, Metacran [17] lists 16 ...

  5. Comparison of statistical packages - Wikipedia

    en.wikipedia.org/wiki/Comparison_of_statistical...

    The following tables compare general and technical information for a number of statistical analysis packages. General information ... C++, Python, R, js R, Python ...

  6. R (programming language) - Wikipedia

    en.wikipedia.org/wiki/R_(programming_language)

    R is a programming language for statistical computing and data visualization. It has been adopted in the fields of data mining, bioinformatics and data analysis. [9] The core R language is augmented by a large number of extension packages, containing reusable code, documentation, and sample data. R software is open-source and free software.

  7. ggplot2 - Wikipedia

    en.wikipedia.org/wiki/Ggplot2

    ggplot2 is an open-source data visualization package for the statistical programming language R.Created by Hadley Wickham in 2005, ggplot2 is an implementation of Leland Wilkinson's Grammar of Graphics—a general scheme for data visualization which breaks up graphs into semantic components such as scales and layers. ggplot2 can serve as a replacement for the base graphics in R and contains a ...

  8. RStudio - Wikipedia

    en.wikipedia.org/wiki/RStudio

    RStudio IDE (or RStudio) is an integrated development environment for R, a programming language for statistical computing and graphics. It is available in two formats: RStudio Desktop is a regular desktop application while RStudio Server runs on a remote server and allows accessing RStudio using a web browser .

  9. Tidyverse - Wikipedia

    en.wikipedia.org/wiki/Tidyverse

    The tidyverse is a collection of open source packages for the R programming language introduced by Hadley Wickham [1] and his team that "share an underlying design philosophy, grammar, and data structures" of tidy data. [2] Characteristic features of tidyverse packages include extensive use of non-standard evaluation and encouraging piping. [3 ...