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Nucleotide analog interference mapping (NAIM) is the process of using nucleotide analogs, molecules that are similar in some ways to nucleotides but lack function, to determine the importance of a functional group at each location of an RNA molecule. [39] [40] The process of NAIM is to insert a single nucleotide analog into a unique site.
Nucleic acid NMR is the use of nuclear magnetic resonance spectroscopy to obtain information about the structure and dynamics of nucleic acid molecules, such as DNA or RNA. It is useful for molecules of up to 100 nucleotides, and as of 2003, nearly half of all known RNA structures had been determined by NMR spectroscopy.
Clar's rule states that for a benzenoid polycyclic aromatic hydrocarbon (i.e. one with only hexagonal rings), the resonance structure with the largest number of disjoint aromatic π-sextets is the most important to characterize its chemical and physical properties. Such a resonance structure is called a Clar structure. In other words, a ...
Nuclear magnetic resonance crystallography (NMR crystallography) is a method which utilizes primarily NMR spectroscopy to determine the structure of solid materials on the atomic scale. Thus, solid-state NMR spectroscopy would be used primarily, possibly supplemented by quantum chemistry calculations (e.g. density functional theory ), [ 1 ...
Like ordinary Raman spectroscopy, resonance Raman is compatible with samples in water, which has a very weak scattering intensity and little contribution to spectra. However, the need for an excitation laser with a wavelength matching that of an electronic transition in the analyte of interest somewhat limits the applicability of the method. [8]
The origin, for purposes of this explanation, can be thought of as the position of a molecule's localized unpaired electron. To determine the direction to the spin active nucleus from the localized unpaired electron (remember: unpaired electrons are, themselves, spin active) one employs the principle of magnetic angle selection.
The total time of a molecule stays on state one is t 1 = 100 second (s), state two t 2 = 20 s, and state three is t 3 = 10 s. Among the 100 s the molecule stays state one, it transfers to state two 70 times and transfers to state three 30 times at the end of its dwell times, the rate constant of state 1 to state 2 is thus k 12 = 70/100 = 0.7 s ...
These properties are fundamentally the same as those used in the more familiar magnetic resonance imaging (MRI), but the molecular applications use a somewhat different approach, appropriate to the change of scale from millimeters (of interest to radiologists) to nanometers (bonded atoms are typically a fraction of a nanometer apart), a factor ...