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The result of BLAST is a list of exons with each alignment extending just past the end of the exon. BLAT, however, correctly places each base of the mRNA onto the genome, using each base only once and can be used to identify intron-exon boundaries (i.e. splice sites). [1] [13] BLAT is less sensitive than BLAST. [2]
While BLAST does a linear search, BLAT relies on k-mer indexing the database, and can thus often find seeds faster. [23] Another software alternative similar to BLAT is PatternHunter . Advances in sequencing technology in the late 2000s has made searching for very similar nucleotide matches an important problem.
In cell biology, precursor cells—also called blast cells—are partially differentiated, or intermediate, and are sometimes referred to as progenitor cells. A precursor cell is a stem cell with the capacity to differentiate into only one cell type, meaning they are unipotent stem cells .
Biology is the scientific study of life. [ 1 ] [ 2 ] [ 3 ] It is a natural science with a broad scope but has several unifying themes that tie it together as a single, coherent field. [ 1 ] [ 2 ] [ 3 ] For instance, all organisms are composed of at least one cell that processes hereditary information encoded in genes , which can be transmitted ...
Comparison of monoblast, promonocyte and monocyte. A typical monoblast is about 12 to 20 μm in diameter, has a nuclear to cytoplasm ratio of 4:1 to 3:1, and, like most myeloid blasts, has a round to oval nucleus with fine chromatin structure.
The division of blastomeres from the zygote allows a single fertile cell to continue to cleave and differentiate until a blastocyst forms. The differentiation of the blastomere allows for the development of two distinct cell populations: the inner cell mass, which becomes the precursor to the embryo, and the trophectoderm, which becomes the precursor to the placenta.
A protein superfamily is the largest grouping of proteins for which common ancestry can be inferred (see homology).Usually this common ancestry is inferred from structural alignment [1] and mechanistic similarity, even if no sequence similarity is evident. [2]
A Southern blot is a method routinely used in molecular biology for detection of a specific DNA sequence in DNA samples. Southern blotting combines transfer of electrophoresis-separated DNA fragments to a filter membrane and subsequent fragment detection by probe hybridization.