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  2. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    Linux, macOS, Windows: GPL and LGPL: Free open source GNU GPLv2 or later EMBOSS: Suite of packages for sequencing, searching, etc. written in C: Linux, macOS, Unix, Windows [4] GPL and LGPL: Collaborative project Galaxy: Scientific workflow and data integration system Unix-like: Academic Free: Collaborative project GenePattern

  3. List of alignment visualization software - Wikipedia

    en.wikipedia.org/wiki/List_of_alignment...

    The third is necessary because algorithms for both multiple sequence alignment and structural alignment use heuristics which do not always perform perfectly. The fourth is a great example of how interactive graphical tools enable a worker involved in sequence analysis to conveniently execute a variety if different computational tools to explore ...

  4. Keras - Wikipedia

    en.wikipedia.org/wiki/Keras

    Keras is an open-source library that provides a Python interface for artificial neural networks. Keras was first independent software, then integrated into the TensorFlow library, and later supporting more. "Keras 3 is a full rewrite of Keras [and can be used] as a low-level cross-framework language to develop custom components such as layers ...

  5. Deeplearning4j - Wikipedia

    en.wikipedia.org/wiki/Deeplearning4j

    Eclipse Deeplearning4j is a programming library written in Java for the Java virtual machine (JVM). [ 2 ] [ 3 ] It is a framework with wide support for deep learning algorithms. [ 4 ] Deeplearning4j includes implementations of the restricted Boltzmann machine , deep belief net , deep autoencoder, stacked denoising autoencoder and recursive ...

  6. List of sequence alignment software - Wikipedia

    en.wikipedia.org/wiki/List_of_sequence_alignment...

    Low power consumption is useful for datacentre equipment. Predictable runtime. Better price/performance than software sliding window aligners on current hardware, but not better than software BWT-based aligners currently. Can manage large numbers (>2) of mismatches. Will find all hit positions for all seeds.

  7. eric (software) - Wikipedia

    en.wikipedia.org/wiki/Eric_(software)

    eric is licensed under the GNU General Public License version 3 or later and is thereby Free Software.This means in general terms that the source code of eric can be studied, changed and improved by anyone, that eric can be run for any purpose by anyone and that eric - and any changes or improvements that may have been made to it - can be redistributed by anyone to anyone as long as the ...

  8. List of RNA-Seq bioinformatics tools - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA-Seq...

    wapRNA This is a free web-based application for the processing of high-throughput RNA-Seq data (wapRNA) from next generation sequencing (NGS) platforms, such as Genome Analyzer of Illumina Inc. (Solexa) and SOLiD of Applied Biosystems (SOLiD). wapRNA provides an integrated tool for RNA sequence, refers to the use of High-throughput sequencing ...

  9. List of Unified Modeling Language tools - Wikipedia

    en.wikipedia.org/wiki/List_of_Unified_Modeling...

    Any kind of languages as it is compatible with code generator tools like Eclipse UMLGenerators or Acceleo Any kind of languages supported by Eclipse UML Generators Eclipse Open source under EPL license, based on Eclipse, EMF, Sirius UMLet: No No No No No Java Eclipse, Visual Studio Code: Source/text focused simple modeling tool UModel: Yes Yes ...

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