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In 2010, the project finished its pilot phase, which was described in detail in a publication in the journal Nature. [1] In 2012, the sequencing of 1092 genomes was announced in a Nature publication. [2] In 2015, two papers in Nature reported results and the completion of the project and opportunities for future research. [3] [4]
The WHG has been involved in many international statistical genetics advances including the Wellcome Trust Case Control Consortia (WTCCC, WTCCC2), the 1000 Genomes Project and the International HapMap Project. [10]
For a long time PHASE [3] was the most accurate method. PHASE was the first method to utilize ideas from coalescent theory concerning the joint distribution of haplotypes. This method used a Gibbs sampling approach in which each individuals haplotypes were updated conditional upon the current estimates of haplotypes from all other samples.
Much of this data was deposited through the 1000 Genomes Project. In June 2011, the data contained within the SRA passed 100 Terabases of DNA in volume. [2] The preferred data format for files submitted to the SRA is the BAM format, which is capable of storing both aligned and unaligned reads. [6]
1 from Southern Kalahari, 3 from Northern Kalahari, 1 Bantu from South Africa [3] Singapore: Singapore Genome Variation Project: 268 individuals from the Chinese, Malay, and Indian population groups in Southeast Asia [4] Italy: SardiNIA Project: 2,000 sequenced Sardinian people [5] Germany: PopGen (German) Genotyping of 10,000 German people [6 ...
[2] [3] It was conceived as a large scale DNA sequencing centre to participate in the Human Genome Project, and went on to make the largest single contribution to the gold standard sequence of the human genome. From its inception the institute established and has maintained a policy of data sharing, and does much of its research in collaboration.
Alabama jumped Miami for the final spot in the provisional playoff field on Tuesday despite having a 9-3 record to Miami’s 10-2 record. The Hurricanes have lost two of their last three games and ...
In genetics, imputation is the statistical inference of unobserved genotypes. [1] It is achieved by using known haplotypes in a population, for instance from the HapMap or the 1000 Genomes Project in humans, thereby allowing to test for association between a trait of interest (e.g. a disease) and experimentally untyped genetic variants, but whose genotypes have been statistically inferred ...