Search results
Results from the WOW.Com Content Network
BLAST is also often used as part of other algorithms that require approximate sequence matching. BLAST is available on the web on the NCBI website. Different types of BLASTs are available according to the query sequences and the target databases.
The NCBI assigns a unique identifier (taxonomy ID number) to each species of organism. [5] The NCBI has software tools that are available through web browsers or by FTP. For example, BLAST is a sequence similarity searching program. BLAST can do sequence comparisons against the GenBank DNA database in less than 15 seconds.
HPC-BLAST: NCBI compliant multinode and multicore BLAST wrapper. Distributed with the latest version of BLAST, this wrapper facilitates parallelization of the algorithm on modern hybrid architectures with many nodes and many cores within each node. [2] Protein: Burdyshaw CE, Sawyer S, Horton MD, Brook RG, Rekapalli B: 2017 CS-BLAST
Website www .ncbi .nlm .nih .gov /BLAST /fasta .shtml In bioinformatics and biochemistry , the FASTA format is a text-based format for representing either nucleotide sequences or amino acid (protein) sequences, in which nucleotides or amino acids are represented using single-letter codes.
PhagesDB has individual entries for each different virus in the database, along with a separate GeneMark page, allowing a user to cross reference the position of genomes to ensure accuracy of data. PhagesDB can be used on its own but is found to be more accurate when used in collaboration with another bio-informatics website like NCBI Blast. [3]
WU-BLAST with XDF was the first BLAST suite to support indexed-retrieval of NCBI standard FASTA-format sequence identifiers (including the entire range of NCBI identifiers); the first to allow retrieval of individual sequences in part or in whole, natively, translated or reverse-complemented; and the first able to dump the entire contents of a ...
The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences. [1] It involves the following computerized databases: NIG's DNA Data Bank of Japan (), NCBI's GenBank and the EMBL-EBI's European Nucleotide Archive ().
[4] [5] NCBI is the home of GenBank, [6] the U.S. node of the International Sequence Database Consortium, and PubMed, one of the most heavily used sites in the world for the search and retrieval of biomedical information. Lipman is one of the original authors of the BLAST sequence alignment program, and a respected figure in bioinformatics.