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The TRANSFAC database can be used as an encyclopedia of eukaryotic transcription factors. The target sequences and the regulated genes can be listed for each TF, which can be used as benchmark for TFBS recognition tools or as training sets for new transcription factor binding sites (TFBS) recognition algorithms. [12]
a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium. database: website [8] hmChIP a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data. database: website [9] HOCOMOCO: a comprehensive collection of human and mouse transcription factor binding sites ...
ClubSub-P is a database of cluster-based subcellular localization (SCL) predictions for Archaea and Gram negative bacteria. [14] 2011 CoBaltDB: CoBaltDB is a novel powerful platform that provides easy access to the results of multiple localization tools and support for predicting prokaryotic protein localizations. [15] 2010 ComiR
E2F is a group of genes that encodes a family of transcription factors (TF) in higher eukaryotes. Three of them are activators: E2F1, 2 and E2F3a. Six others act as repressors: E2F3b, E2F4-8. All of them are involved in the cell cycle regulation and synthesis of DNA in mammalian cells.
TcoF-DB: Database of transcription co-factors and transcription factor interactions [98] TFcheckpoint: database of human, mouse and rat TF candidates; transcriptionfactor.org (now commercial, selling reagents) MethMotif.org: An integrative cell-specific database of transcription factor binding motifs coupled with DNA methylation profiles. [99]
And based on the study results, it seems like this is the best way to go if you want a really accurate answer. For this study, they used the following tissues: buccal epithelial, saliva, dry blood ...
Therapeutic Target Database (TTD) is a pharmaceutical and medical repository [1] constructed by the Innovative Drug Research and Bioinformatics Group (IDRB) at Zhejiang University, China and the Bioinformatics and Drug Design Group at the National University of Singapore.
AnimalTFDB; Content; Description: animal transcription factor database.: Contact; Research center: Huazhong University of Science and Technology: Laboratory: Hubei Bioinformatics & Molecular Imaging Key Laboratory