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To query a specific part of the UniGene record, use the @ symbol. For example, @gene(symbol) looks for genes with the name of the symbol enclosed in the parentheses, @chr(num) searches for entries that map to chromosome num, @lib(id) returns entries in a cDNA library identified by id, and @pid(id) se- lects entries associated with a GenBank ...
Rather, the relationship of a gene symbol to the gene name is functionally the relationship of a nickname to a formal name (both are complete identifiers)—it is not the relationship of an acronym to its expansion. In fact, many official gene symbol–gene name pairs do not even share their initial-letter sequences (although some do).
While there is much commonality, different parts of the tree of life use slightly different genetic codes. [1] When translating from genome to protein, the use of the correct genetic code is essential.
Gene Annotator: The Gene Annotator or GA tool takes as input a list of gene symbols, RGD IDs, GenBank accession numbers, Ensembl identifiers, or a chromosomal region and retrieves gene orthologs, external database identifiers and ontology annotations for the corresponding genes in RGD. The data can be downloaded into an Excel spreadsheet or ...
Full gene names, and especially gene abbreviations and symbols, are often not specific to a single gene. A marked example is CAP which can refer to any of 6 different genes (BRD4 Archived 2013-10-27 at the Wayback Machine, CAP1 Archived 2013-11-02 at the Wayback Machine, HACD1 Archived 2013-10-07 at the Wayback Machine, LNPEP Archived 2012-09-13 at the Wayback Machine, SERPINB6 Archived 2013 ...
Users can select various types of identifiers such as CCDS ID, gene ID, gene symbol, nucleotide ID and protein ID to search for specific CCDS information. [1] The CCDS reports (Figure 1) are presented in a table format, providing links to specific resources, such as a history report, Entrez Gene [ 10 ] or re-query the CCDS data set.
The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations. It is produced and maintained by the National Center for Biotechnology Information (NCBI; a part of the National Institutes of Health in the United States) as part of the International Nucleotide Sequence Database Collaboration (INSDC).
A visualization of Porphyra umbilicalis chloroplast genome annotation (GenBank accession: MF385003.1) made with Chloroplot. [1] The number of genes, the genome length, and the GC content are placed in the middle black circle.