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  2. Hydrogen bond - Wikipedia

    en.wikipedia.org/wiki/Hydrogen_bond

    In a discrete water molecule, there are two hydrogen atoms and one oxygen atom. The simplest case is a pair of water molecules with one hydrogen bond between them, which is called the water dimer and is often used as a model system. When more molecules are present, as is the case with liquid water, more bonds are possible because the oxygen of ...

  3. Molecular recognition - Wikipedia

    en.wikipedia.org/wiki/Molecular_recognition

    Static molecular recognition is likened to the interaction between a key and a keyhole; it is a 1:1 type complexation reaction between a host molecule and a guest molecule to form a host–guest complex. To achieve advanced static molecular recognition, it is necessary to make recognition sites that are specific for guest molecules.

  4. Ball-and-stick model - Wikipedia

    en.wikipedia.org/wiki/Ball-and-stick_model

    Double and triple bonds are usually represented by two or three curved rods, respectively, or alternately by correctly positioned sticks for the sigma and pi bonds. In a good model, the angles between the rods should be the same as the angles between the bonds , and the distances between the centers of the spheres should be proportional to the ...

  5. Water dimer - Wikipedia

    en.wikipedia.org/wiki/Water_dimer

    The first theoretical study of the water dimer was an ab initio calculation published in 1968 by Morokuma and Pedersen. [10] Since then, the water dimer has been the focus of sustained interest by theoretical chemists concerned with hydrogen bonding—a search of the CAS database up to 2006 returns over 1100 related references (73 of them in 2005).

  6. Molecular self-assembly - Wikipedia

    en.wikipedia.org/wiki/Molecular_self-assembly

    Molecular self-assembly is a key concept in supramolecular chemistry. [6] [7] [8] This is because assembly of molecules in such systems is directed through non-covalent interactions (e.g., hydrogen bonding, metal coordination, hydrophobic forces, van der Waals forces, pi-stacking interactions, and/or electrostatic) as well as electromagnetic interactions.

  7. Molecular model - Wikipedia

    en.wikipedia.org/wiki/Molecular_model

    Double and triple bonds use two longer flexible bonds which restrict rotation and support conventional cis/trans stereochemistry. Beever's ball and stick model of ruby (Cr-doped corundum) made with acrylic balls and stainless steel rods. However, most molecules require holes at other angles and specialist companies manufacture kits and bespoke ...

  8. Molecular orbital diagram - Wikipedia

    en.wikipedia.org/wiki/Molecular_orbital_diagram

    The smallest molecule, hydrogen gas exists as dihydrogen (H-H) with a single covalent bond between two hydrogen atoms. As each hydrogen atom has a single 1s atomic orbital for its electron, the bond forms by overlap of these two atomic orbitals. In the figure the two atomic orbitals are depicted on the left and on the right.

  9. Tetrahedral molecular geometry - Wikipedia

    en.wikipedia.org/wiki/Tetrahedral_molecular_geometry

    The most common arrangement of hydrogen atoms around an oxygen is tetrahedral with two hydrogen atoms covalently bonded to oxygen and two attached by hydrogen bonds. Since the hydrogen bonds vary in length many of these water molecules are not symmetrical and form transient irregular tetrahedra between their four associated hydrogen atoms. [4]