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Jmol is computer software for molecular modelling of chemical structures in 3 dimensions. [2] It is an open-source Java viewer for chemical structures in 3D [3]. The name originated from ava (the programming language) + [mol]ecules, and also the mol file format. JSmol is an implementation in JavaScript of the functionality of Jmol. [4]
To display molecules with Jmol, your browser needs to be Java enabled. Two examples of Jmol images in a wiki are here and here. These use Jmol to show medium sized molecules with buttons to control the rotation of the molecules. The right mouse button opens a Jmol menu while the left mouse button can be used to move the image.
Between option 2 and 3, I don't know. Option 3 enables the use of gzipped files which can be interesting for very big files, but all files will be stored in the Image namespace (but categories can still be used). --NicoV 20:35, 27 April 2006 (UTC) I have one concern about putting files in the image space.
Jmol: Free open-source: Java (applet or standalone program) Transpiled HTML5/JavaScript for browser [10] [self-published source?] Supports advanced capabilities such as loading multiple molecules with independent movement, surfaces and molecular orbitals, cavity visualization, crystal symmetry MDL Chime: Proprietary, free use noncommercial
[3] Column K is that of Koltun's patent. [4] Column J is the color scheme used by the molecular visualizer Jmol. [9] Column R is the scheme used by Rasmol; when two colors are shown, the second one is valid for versions 2.7.3 and later. [9] [10] Column P consists of the colors in the PubChem database managed by the United States National ...
A molecule of pamidronic acid, as drawn by the Jmol program. Hydrogen is white, carbon is grey, nitrogen is blue, oxygen is red, and phosphorus is orange. In the ball-and-stick model, atoms are drawn as small sphered connected by rods representing the chemical bonds between them.
Chime largely has been superseded by Jmol, [5] a non-proprietary open-source Java molecular visualization application and JavaScript applet that has maintained most Chime command compatibility while adding numerous features.
The Jmol 3D model. When |SMILES= has input, the template automatically adds an external link to the Jmol 3D molecule model. |Jmol=none will suppress (hide) that data row ("none" is case-sensitive). |Jmol= some SMILES string will link to the 3D-model of that string (i.e. overwriting |SMILES= input). SMILES will show its input unchanged.