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Both Jmol and JSmol render an interactive 3D representation of a molecule or other structure that may be used as a teaching tool, [5] or for research, in several fields, e.g. chemistry, biochemistry, materials science, crystallography, [6] symmetry or nanotechnology.
Chemical structure to name conversion; Chemical name to structure conversion; NMR spectrum simulation (1 H and 13 C); Mass spectrum simulation; Structure cleanup; Draw ligand Structure; An extensive collection of templates, including style templates for most major chemical journals.
Chemical structures and reaction schemes should conform to the following: Images should be drawn with a molecule editor, never freehand; ACS settings should be used for both structures and reaction schemes. These settings are normally available as templates in chemical drawing programs. Use sans-serif fonts like Arial.
Homology model of the DHRS7B protein created with Swiss-model and rendered with PyMOL. Homology modeling, also known as comparative modeling of protein, refers to constructing an atomic-resolution model of the "target" protein from its amino acid sequence and an experimental three-dimensional structure of a related homologous protein (the "template").
8,789 structures were reported in New Journal of Chemistry. These 25 journals account for 704,541 of the 996,193 or 70.7% of the structures in the CSD. These data show that most structures are determined by X-ray diffraction, with less than 1% of structures being determined by neutron diffraction or powder diffraction. The number of error-free ...
An alpha-helix with hydrogen bonds (yellow dots) The α-helix is the most abundant type of secondary structure in proteins. The α-helix has 3.6 amino acids per turn with an H-bond formed between every fourth residue; the average length is 10 amino acids (3 turns) or 10 Å but varies from 5 to 40 (1.5 to 11 turns).
In chemistry, the ball-and-stick model is a molecular model of a chemical substance which displays both the three-dimensional position of the atoms and the bonds between them. [1] The atoms are typically represented by spheres , connected by rods which represent the bonds.
Swiss-model (stylized as SWISS-MODEL) is a structural bioinformatics web-server dedicated to homology modeling of 3D protein structures. [1] [2] As of 2024, homology modeling is the most accurate method to generate reliable three-dimensional protein structure models and is routinely used in many practical applications. Homology (or comparative ...