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Both Jmol and JSmol render an interactive 3D representation of a molecule or other structure that may be used as a teaching tool, [5] or for research, in several fields, e.g. chemistry, biochemistry, materials science, crystallography, [6] symmetry or nanotechnology.
The Simplified Molecular Input Line Entry System (SMILES) is a specification in the form of a line notation for describing the structure of chemical species using short ASCII strings. SMILES strings can be imported by most molecule editors for conversion back into two-dimensional drawings or three-dimensional models of the molecules.
8,789 structures were reported in New Journal of Chemistry. These 25 journals account for 704,541 of the 996,193 or 70.7% of the structures in the CSD. These data show that most structures are determined by X-ray diffraction, with less than 1% of structures being determined by neutron diffraction or powder diffraction. The number of error-free ...
Structural chemistry is a part of chemistry and deals with spatial structures of molecules (in the gaseous, liquid or solid state) and solids (with extended structures that cannot be subdivided into molecules). For structure elucidation [1] a range of different methods is used.
On those terms, a crystal structure database can be regarded as comprehensive, if it contains a collection of all (re-)published crystal structures in the category of interest and is updated frequently. Searching for structures in such a database can replace more time-consuming scanning of the open literature. Access to crystal structure ...
3D structure A Newman projection is a drawing that helps visualize the 3-dimensional structure of a molecule. [ 1 ] This projection most commonly sights down a carbon-carbon bond, making it a very useful way to visualize the stereochemistry of alkanes.
Jmol is an open-source Java-based viewer for browsing molecular structures on the web; it includes a simplified "cartoon" version of ribbons. Other graphics programs such as DeepView (example: urease) and MolMol (example: SH2 domain) also produce ribbon images. KiNG [11] is the Java-based successor to Mage (examples: α-hemolysin top view and ...
As an example, biological activity can be expressed quantitatively as the concentration of a substance required to give a certain biological response. Additionally, when physicochemical properties or structures are expressed by numbers, one can find a mathematical relationship, or quantitative structure-activity relationship, between the two.