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The ORF Finder (Open Reading Frame Finder) [16] is a graphical analysis tool which finds all open reading frames of a selectable minimum size in a user's sequence or in a sequence already in the database. This tool identifies all open reading frames using the standard or alternative genetic codes.
This list of protein subcellular localisation prediction tools includes software, databases, and web services that are used for protein subcellular localization prediction. Some tools are included that are commonly used to infer location through predicted structural properties, such as signal peptide or transmembrane helices , and these tools ...
The tools available at ExPASy were used to predict post-translational modification sites on C16orf95. [16] The following modifications are predicted: palmitoylation, phosphorylation, and O-linked glycosylation. Bolded residues in the table indicate sites that are conserved in more than one species.
An upstream open reading frame (uORF) is an open reading frame (ORF) within the 5' untranslated region (5'UTR) of an mRNA. uORFs can regulate eukaryotic gene expression. [1] [2] Translation of the uORF typically inhibits downstream expression of the primary ORF. However, in some genes such as yeast GCN4, translation of specific uORFs may ...
Logo Expasy 2020. Expasy is an online bioinformatics resource operated by the SIB Swiss Institute of Bioinformatics.It is an extensible and integrative portal which provides access to over 160 databases and software tools and supports a range of life science and clinical research areas, from genomics, proteomics and structural biology, to evolution and phylogeny, systems biology and medical ...
The image was created using Phyre2. [ 14 ] C22orf23 has many predicted post-translational modifications such as: phosphorylation sites , [ 15 ] cell attachment sequences, N-myristoylation sites, [ 16 ] O-linked glycosylation sites, [ 17 ] glycation sites, [ 18 ] Ac-ASQK cleaved-acetylated sites, and Sumoylation sites.
The UPF0687 Protein C20orf27 has four other aliases, Chromosome 20 Open Reading Frame 27, [8] Hypothetical Protein LOC54976, [9] C20orf27, and FLJ20550. It is located on the minus strand at 20p13. [8]
C6orf163 and nearby genes on chromosome 6. C6orf163 is a 20.6 kb gene encoded on the plus strand of chromosome 6 (6q15). C6orf163 is predicted to be part of a readthrough locus with its neighboring genes on the plus strand, SMIM8 (small integral membrane protein 8, also known as C6orf162), LINC01590 (long intergenic non-coding RNA 1590), and CFAP206 (cilia and flagella associated protein 206).
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