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Pairwise Alignment: FAST/APPROXIMATE SLOW/ACCURATE Enter your sequences (with labels) below (copy & paste): PROTEIN DNA Support Formats: FASTA (Pearson), NBRF/PIR, EMBL/Swiss Prot, GDE, CLUSTAL, and GCG/MSF
Clustal Omega is a new multiple sequence alignment program that uses seeded guide trees and HMM profile-profile techniques to generate alignments between three or more sequences. For the alignment of two sequences please instead use our pairwise sequence alignment tools.
Multiple sequence alignment (MSA) is the process or the result of sequence alignment of three or more biological sequences, generally protein, DNA, or RNA. These alignments are used to infer evolutionary relationships via phylogenetic analysis and can highlight homologous features between sequences.
COBALT is a multiple sequence alignment tool that finds a collection of pairwise constraints derived from conserved domain database, protein motif database, and sequence similarity, using RPS-BLAST, BLASTP, and PHI-BLAST.
The NCBI Multiple Sequence Alignment Viewer (MSA) is a graphical display for nucleotide and protein sequence alignments. Review documentation or watch a video tutorial. If playback doesn't begin shortly, try restarting your device. Videos you watch may be added to the TV's watch history and influence TV recommendations.
Multiple Sequence Alignment Viewer application (MSA) is a web application that visualizes alignments created by programs such as MUSCLE or CLUSTAL, including alignments from NCBI BLAST results. Users can also upload and view their own alignment files in alignment FASTA or ASN format.
Multiple Sequence Alignment (MSA) is a fundamental technique in bioinformatics used to align three or more biological sequences—typically DNA, RNA, or protein sequences—to identify similarities, differences, and conserved regions.