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Brain RNA-Seq [160] An RNA-Seq transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex. FusionCancer [161] a database of cancer fusion genes derived from RNA-seq data. Hipposeq a comprehensive RNA-seq database of gene expression in hippocampal principal neurons.
The fundamental aspect of BRB-seq is the optimized sample barcode primers. Each barcoded nucleotide sequence includes an adaptor for primer annealing, a 14-nt long barcode that assigns a unique identifier to each individual RNA sample, and a random 14-nt long UMI that tags each mRNA molecule with a unique sequence to distinguish between original mRNA transcripts and duplicates that result from ...
3D structure protein databases, Protein sequence databases MobiDB: Database of intrinsically disordered and mobile proteins: John Moult, Christine Orengo, Predrag Radivojac University of Padua: Italian Government database of intrinsic protein disorder annotation 3D structure protein databases, Protein sequence databases ModBase
A catalog of human long poly-adenylated RNA transcripts derived from computational analysis of high-throughput RNA-Seq data from over 6,500 samples, spanning diverse cancer and tissue types [13] slncky Evolution Browser: This site contains alignments and evolutionary metrics of conserved lncRNAs. [14] Cancer LncRNA Census (CLC)
The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences. [1] It involves the following computerized databases : NIG 's DNA Data Bank of Japan ( Japan ), NCBI 's GenBank ( USA ) and the EMBL - EBI 's European Nucleotide Archive ( EMBL ).
The EMBL Nucleotide Sequence Database (EMBL-Bank) has increased in size from around 600 entries in 1982 to over 2.5×10 8 by December 2012. [16] The EMBL Nucleotide Sequence Database (also known as EMBL-Bank) is the section of the ENA which contains high-level genome assembly details, as well as assembled sequences and their functional annotation.
Gene Expression Omnibus (GEO) is a database for gene expression profiling and RNA methylation profiling managed by the National Center for Biotechnology Information (NCBI). [1] These high-throughput screening genomics data are derived from microarray or RNA-Seq experimental data. [2]
As of 2011, most SRA sequence data was produced by Illumina's Genome Analyzer. [5] The volume of data deposited in the Sequence Read Archive has grown rapidly. As of September 2010, 65% of the SRA was human genomic sequence, with another 16% relating to human metagenome sequence reads. [6] Much of this data was deposited through the 1000 ...
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