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DESeq2 is a software package in the field of bioinformatics and computational biology for the statistical programming language R. It is primarily employed for the analysis of high-throughput RNA sequencing (RNA-seq) data to identify differentially expressed genes between different experimental conditions.
Within computational biology, an MA plot is an application of a Bland–Altman plot for visual representation of genomic data. The plot visualizes the differences between measurements taken in two samples, by transforming the data onto M (log ratio) and A (mean average) scales, then plotting these values.
fastqp Simple FASTQ quality assessment using Python. Kraken: [9] A set of tools for quality control and analysis of high-throughput sequence data. HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run.
The software C++ library for LC-MS/MS data management and analysis offers an infrastructure for the development of mass spectrometry-related software. It allows peptide and metabolite quantification and supports label-free and isotopic-label-based quantification (such as iTRAQ and TMT and SILAC ) as well as targeted SWATH-MS quantification.
FORM has been the essential tool to calculate the higher-order QCD beta function. The mathematical structure of multiple zeta values has been researched with dedicated FORM programs. [2] The software package FormCalc which is widely used in the physics community to calculate Feynman diagrams is built on top of FORM.
SYDNEY (Reuters) -The remaining five members of the "Bali Nine" Australian drug ring have returned from Indonesia after diplomatic efforts between the countries this month to strike a repatriation ...
RB Christian McCaffrey, San Francisco 49ers: McCaffrey was the No. 1 overall pick in nearly all early fantasy drafts, but we all know about his long-term injury that delayed the start of his ...
Here's how to distinguish "sundowning"—agitation or confusion later in the day in dementia patients—from typical aging, from doctors who treat older adults.