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Human, Mus musculus, Arabidopsis thaliana, Drosophila melanogaster [32] [33] mGene Support-vector machine (SVM) based system to find genes: Eukaryotes [34] mGene.ngs SVM based system to find genes using heterogeneous information: RNA-seq, tiling arrays: Eukaryotes [35] MORGAN: Decision tree system to find genes in vertebrate DNA: Eukaryotes [36 ...
The software is designed flexibly to perform a wide range of basic, large-scale genetic analyses. PLINK currently supports following functionalities: data management; basic statistics (F ST, missing data, tests of Hardy–Weinberg equilibrium, inbreeding coefficient, etc.); Linkage disequilibrium (LD) calculation;
Gene Designer is a computer software package for bioinformatics. [ 1 ] [ 2 ] It is used by molecular biologists from academia, government, and the pharmaceutical, chemical, agricultural, and biotechnology industries to design, [ 3 ] clone, and validate genetic sequences.
A computer-assisted design (CAD) tool for synthetic biology, used to design genetic constructs based on grammar rules. Linux, macOS, Windows: Apache License 2.0 GenoCAD Team (Virginia Bioinformatics Institute) Genomespace: Centralized web application that provides data format transformations and facilitates connections with other bioinformatics ...
Maximum likelihood, stochastic heuristics (genetic algorithm, metapopulation genetic algorithm, simulated annealing, etc.), discrete Gamma rate heterogeneity, ancestral state reconstruction, model testing: Michel C. Milinkovitch and Raphaël Helaers MicrobeTrace: MicrobeTrace is a free, browser-based web application.
Autodesk Genetic Constructor (suspended) BIOFAB Clotho BIOFAB Edition; BIOFAB BIOFAB Studio; EGF Codons and EGF CUBA (Collection of Useful Biological Apps) by the Edinburgh Genome Foundry; Integrative Genomics Viewer (part of Google Genomics) Mengqvist's DNApy
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Ensembl makes these data freely accessible to the world research community. All the data and code produced by the Ensembl project is available to download, [7] and there is also a publicly accessible database server allowing remote access. In addition, the Ensembl website provides computer-generated visual displays of much of the data.