Search results
Results from the WOW.Com Content Network
PHP language toolkit with classes for DNA and protein sequence analysis, alignment, database parsing, and other bioinformatics tools Cross-platform: GPL v2 Open Bioinformatics Foundation: Biopython: Python language toolkit Cross-platform: Biopython [2] Open Bioinformatics Foundation: BioRuby: Ruby language toolkit Linux, macOS, Windows [3] GPL ...
Uses an iterative version of the Rabin-Karp string search algorithm. Yes Free, GPL: SparkBWA Integrates the Burrows–Wheeler Aligner (BWA) on an Apache Spark framework running atop Hadoop. Version 0.2 of October 2016, supports the algorithms BWA-MEM, BWA-backtrack, and BWA-ALN. All of them work with single-reads and paired-end reads. Yes
Up until version 2.3, Keras supported multiple backends, including TensorFlow, Microsoft Cognitive Toolkit, Theano, and PlaidML. [7] [8] [9] As of version 2.4, only TensorFlow was supported. Starting with version 3.0 (as well as its preview version, Keras Core), however, Keras has become multi-backend again, supporting TensorFlow, JAX, and ...
MacVector is a commercial sequence analysis application for Apple Macintosh computers running Mac OS X. It is intended to be used by molecular biologists to help analyze, design, research and document their experiments in the laboratory. MacVector 18.1 is a Universal Binary capable of running on Intel and Apple Silicon Macs.
Yes [9] [10] No Computational Graph Yes [11] Yes Yes Yes Yes [12] Yes Dlib: Davis King 2002 Boost Software License: Yes Cross-platform: C++: C++, Python: Yes No Yes No Yes Yes No Yes Yes Yes Yes Flux: Mike Innes 2017 MIT license: Yes Linux, MacOS, Windows (Cross-platform) Julia: Julia: Yes No Yes Yes [13] Yes Yes No Yes Yes Intel Data Analytics ...
Eclipse Deeplearning4j is a programming library written in Java for the Java virtual machine (JVM). [ 2 ] [ 3 ] It is a framework with wide support for deep learning algorithms. [ 4 ] Deeplearning4j includes implementations of the restricted Boltzmann machine , deep belief net , deep autoencoder, stacked denoising autoencoder and recursive ...
wapRNA This is a free web-based application for the processing of high-throughput RNA-Seq data (wapRNA) from next generation sequencing (NGS) platforms, such as Genome Analyzer of Illumina Inc. (Solexa) and SOLiD of Applied Biosystems (SOLiD). wapRNA provides an integrated tool for RNA sequence, refers to the use of High-throughput sequencing ...
These algorithms typically do not work well for larger read sets, as they do not easily reach a global optimum in the assembly, and do not perform well on read sets that contain repeat regions. [1] Early de novo sequence assemblers, such as SEQAID [2] (1984) and CAP [3] (1992), used greedy algorithms, such as overlap-layout-consensus (OLC ...