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samtools sort -m 5000000 unsorted_in.bam sorted_out Read the specified unsorted_in.bam as input, sort it in blocks up to 5 million k (5 Gb) [ units verification needed ] and write output to a series of bam files named sorted_out.0000.bam , sorted_out.0001.bam , etc., where all bam 0 reads come before any bam 1 read, etc. [ verification needed ]
Binary Alignment Map (BAM) is the comprehensive raw data of genome sequencing; [1] it consists of the lossless, compressed binary representation of the Sequence Alignment Map-files.
SAM files can be analysed and edited with the software SAMtools. [1] The header section must be prior to the alignment section if it is present. Headings begin with the '@' symbol, which distinguishes them from the alignment section. Alignment sections have 11 mandatory fields, as well as a variable number of optional fields. [1]
www.htslib.org /doc /samtools-mpileup.html Pileup format is a text-based format for summarizing the base calls of aligned reads to a reference sequence. This format facilitates visual display of SNP /indel calling and alignment.
Eunectes deschauenseei, commonly known as the dark-spotted anaconda [1] [4] or De Schauensee's anaconda, [5] is a species of snake in the subfamily Boinae of the family Boidae. The species is native to northeastern South America. Like all boas, it is a nonvenomous constrictor. No subspecies are currently recognized. [4]
Anaconda is a distribution of the Python and R programming languages for scientific computing (data science, machine learning applications, large-scale data processing, predictive analytics, etc.), that aims to simplify package management and deployment. Anaconda distribution includes data-science packages suitable for Windows, Linux, and macOS ...
The base was captured by U.S. forces in early April 2003, renaming it Camp Anaconda and later Joint Base Balad (JBB). [3] The area was nicknamed "Mortaritaville" (in a play on Margaritaville), because of a high frequency of incoming mortars, at times every day, from Iraqi insurgents. Camp Anaconda has also been more colloquially-termed "Life ...
Eunectes beniensis is a species of boa, reaching between 3.3–4.4 meters (11–14 ft) in length and can weigh up to 35 kilograms (77 lb). [citation needed] It was initially believed to be the result of hybridization between the green (Eunectes murinus) and yellow anaconda (Eunectes notaeus), but was later determined to be a distinct species.