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This page is a subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: Aid general understanding of large-scale DNA or protein alignments; Visualize alignments for figures and publication; Manually edit and curate automatically generated alignments; Analysis in depth
The "VisSim/C-Code" add-on generates ANSI C code for the model, and generates target specific code for on-chip devices like PWM, ADC, encoder, GPIO, I2C etc. This is useful for development of embedded systems. After the behaviour of the controller has been simulated, C-code can be generated, compiled and run on the target.
plots and charts from data Plotly: GUI, command line Python: Commercial: No 2012: Any (web-based) plots and charts in browser, web-sharing and exporting, drag-and-drop data import, Python command line plotutils: command line, C/ C++: GPL: Yes 1989: September 27, 2009 / 2.6: Linux, Mac, Windows: Collection of command line programs, C/C++ API PLplot
Multiple alignment methods try to align all the sequences in each query set. Multiple alignments are often used in identifying conserved sequence regions across a group of sequences hypothesized to be evolutionarily related. Purposes of Alignment Visualization: Aid general understanding of large-scale DNA or protein alignments.
Michel C. Milinkovitch and Raphaël Helaers MicrobeTrace: MicrobeTrace is a free, browser-based web application. 2D and 3D network visualization tool, Neighbor-joining tree visualization, Gantt charts, bubbles charts, networks visualized on maps, flow diagrams, aggregate tables, epi curves, histograms, alignment viewer, and much more.
Visual Molecular Dynamics (VMD) is a molecular modelling and visualization computer program. [2] VMD is developed mainly as a tool to view and analyze the results of molecular dynamics simulations. It also includes tools for working with volumetric data, sequence data, and arbitrary graphics objects.
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A multivalent browser for sequence alignment, phylogeny, and structure. Performs an interactive Evolutionary Trace [25] and other phylogeny-inspired analysis. All [26] MEGA: Software for statistical analysis of molecular evolution. It includes different tree visualization features All [27] MultiDendrograms