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WoLF PSORT is an extension of the PSORT II program for protein subcellular location prediction. (bio.tools entry) [117] https://wolfpsort.hgc.jp/ 2007 YLoc: YLoc is a web server for the prediction of subcellular localization. Predictions are explained and biological properties used for the prediction highlighted.
PSI-blast based secondary structure PREDiction (PSIPRED) is a method used to investigate protein structure. It uses artificial neural network machine learning methods in its algorithm. [ 2 ] [ 3 ] [ 4 ] It is a server-side program, featuring a website serving as a front-end interface, which can predict a protein's secondary structure ( beta ...
server download: 2011 GOR: Information theory/Bayesian inference: Many implementations: Basic GOR GOR V: 2002 (GOR V) Jpred: Multiple Neural network assignment from PSI-BLAST and HMMER profiles. Predicts secondary structure and solvent accessibility: Webserver: server and API: 1998 PredictProtein: Profile-based neural network: Webserver: server ...
An email is sent to the user together with a link to a web page of results. RaptorX Server currently generates the following results: 3-state and 8-state secondary structure prediction, sequence-template alignment, 3D structure prediction, solvent accessibility prediction, disorder prediction and binding site prediction.
Jpred v.4 is the latest version of the JPred Protein Secondary Structure Prediction Server [1] which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure prediction, [2] that has existed since 1998 in different versions.
Constituent amino-acids can be analyzed to predict secondary, tertiary and quaternary protein structure. This list of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading, ab initio methods, secondary structure prediction, and transmembrane helix and signal peptide prediction.
The HH-suite comes with a number of pre-built profile HMMs that can be searched using HHblits and HHsearch, among them a clustered version of the UniProt database, of the Protein Data Bank of proteins with known structures, of Pfam protein family alignments, of SCOP structural protein domains, and many more.
Predict the probability that particular portions of a protein will form amyloid. sequence length Amyloidogenic regions FoldAmyloid [17] 2010 Web Server - FoldAmyloid: Secondary structure-related. Prediction of amyloid regions using expected probability of hydrogen bonds formation and packing densitites of residues. sequence