Search results
Results from the WOW.Com Content Network
The mRNA stem-loop structure forming at the ribosome binding site may control an initiation of translation. [4] [5] Stem-loop structures are also important in prokaryotic rho-independent transcription termination. The hairpin loop forms in an mRNA strand during transcription and causes the RNA polymerase to become dissociated from the DNA ...
If now a second RNA stem-loop has complementary base-sequence, the two loops can base pair resulting in a kissing loop. This animated GIF shows two RNA loops (orange and green) bind to each other in a structure called a kissing loop. The two RNA loops interact through stacking interactions and through hydrogen bonding (interacting bases shown ...
A protein bound to RNA polymerase (nusA) binds to the stem-loop structure tightly enough to cause the polymerase to temporarily stall. This pausing of the polymerase coincides with transcription of the poly-uracil sequence. The weak adenine-uracil bonds lower the energy of destabilization for the RNA-DNA duplex, allowing it to unwind and ...
The IRE is a stem-loop structure within the untranslated regions of mRNAs that encode proteins involved in cellular iron metabolism. The mRNA transcript containing this element is either degraded or stabilized depending upon the binding of specific proteins and the intracellular iron concentrations. [3] Stem-loop structure of an RNA molecule
Three dimensional structure of almost the same pseudoknot from telomerase RNA. (A) sticks (B) backbone. The pdb-file is based on . Colors: A U C G. A pseudoknot is a nucleic acid secondary structure containing at least two stem-loop structures in which half
The D loop is a 4- to 6-bp stem ending in a loop that often contains dihydrouridine. [6] The anticodon loop is a 5-bp stem whose loop contains the anticodon. [6] The TΨC loop is named so because of the characteristic presence of the unusual base Ψ in the loop, where Ψ is pseudouridine, a modified uridine.
MS2 tagging is a technique based upon the natural interaction of the MS2 bacteriophage coat protein with a stem-loop structure from the phage genome, [1] which is used for biochemical purification of RNA-protein complexes and partnered to GFP for detection of RNA in living cells. [2]
SLBP proteins also recognize the tetraloop structure of the histone hairpin, the base of the stem, and the 5' flanking region. The crystal structure of human SLBP in complex with the stem-loop RNA as well as the exonuclease Eri1 reveals that the Arg181 residue of SLBP specifically interacts with the second guanine base in the RNA stem. [8]