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FreeSurfer contains a set of programs with a common focus of analyzing magnetic resonance imaging (MRI) scans of brain tissue. It is an important tool in functional brain mapping and contains tools to conduct both volume based and surface based analysis. [ 4 ]
The FMRIB Software Library, abbreviated FSL, is a software library containing image analysis and statistical tools for functional, structural and diffusion MRI brain imaging data. FSL is available as both precompiled binaries and source code for Apple and PC computers. It is freely available for non-commercial use.
For instance, it has been utilized in academic research involving automatic cranio-facial implant design, [29] brain tumor analysis from Magnetic Resonance images, [30] identification of features in focal liver lesions from MRI scans, [31] radiotherapy planning for prostate cancer, [32] preparation of datasets for fluorescence microscopy ...
ITK is an open-source software toolkit for performing registration and segmentation. Segmentation is the process of identifying and classifying data found in a digitally sampled representation. Typically the sampled representation is an image acquired from such medical instrumentation as CT or MRI scanners. Registration is the task of aligning ...
Brain Tumor Segmentation under Studierfenster. Aortic Dissection Inpainting under Studierfenster. Studierfenster or StudierFenster (SF) [ 1 ] [ 2 ] [ 3 ] is a free, non-commercial open science client/server-based medical imaging processing online framework.
Neuroimaging software is used to study the structure and function of the brain. To see an NIH Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site.
A fully automatic brain segmentation algorithm based on closely related ideas of multi-scale watersheds has been presented by Undeman and Lindeberg [76] and been extensively tested in brain databases. These ideas for multi-scale image segmentation by linking image structures over scales have also been picked up by Florack and Kuijper. [77]
In addition to producing 3D models from conventional MRI images, Slicer has also been used to present information derived from fMRI (using MRI to assess blood flow in the brain related to neural or spinal cord activity), [11] DTI (using MRI to measure the restricted diffusion of water in imaged tissue), [12] and electrocardiography. [13]