Search results
Results from the WOW.Com Content Network
Compressed Reference-oriented Alignment Map (CRAM) is a compressed columnar file format for storing biological sequences aligned to a reference sequence, initially devised by Markus Hsi-Yang Fritz et al. [1] CRAM was designed to be an efficient reference-based alternative to the Sequence Alignment Map (SAM) and Binary Alignment Map (BAM) file ...
Bam format uses 0-based coordinate system, where as SAM uses 1-based coordinate system. BAM can represent values in the range [−2^31 , 2^32). [5] To view a list of sequencing and analysis tools that work with SAM/BAM click here.
samtools view -h -b sample_sorted.bam "chr1:10-13" > tiny_sorted.bam Extract the same reads as above, but instead of displaying them, writes them to a new bam file, tiny_sorted.bam . The -b option makes the output compressed and the -h option causes the SAM headers to be output also.
The FASTQ format, used to represent DNA sequencer reads along with quality scores. The SAM and CRAM formats, used to represent genome sequencer reads that have been aligned to genome sequences. The GVF format (Genome Variation Format), an extension based on the GFF3 format.
The compressed ROM/RAM file system (or cramfs) is a free (GPL'ed) read-only Linux file system designed for simplicity and space-efficiency. It is mainly used in embedded and small-footprint systems.
Microsoft Video 1 or MS-CRAM [1] is an early lossy video compression and decompression algorithm that was released with version 1.0 of Microsoft's Video for Windows in November 1992. It is based on MotiVE, a vector quantization codec which Microsoft licensed from Media Vision. In 1993, Media Vision marketed the Pro Movie Spectrum, an ISA board ...
Move over, Wordle, Connections and Mini Crossword—there's a new NYT word game in town! The New York Times' recent game, "Strands," is becoming more and more popular as another daily activity ...
Cram is an application for Apple's OS X and iOS developed by Patrick Chukwura and Ashli Norton of SimpleLeap Software. The software is a flashcard application which allows users to prepare for various types of subject matter using flashcards and multiple choice tests.