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On the molecular level, the interlocked molecules cannot be separated without the breaking of the covalent bonds that comprise the conjoined molecules; this is referred to as a mechanical bond. Examples of mechanically interlocked molecular architectures include catenanes , rotaxanes , molecular knots , and molecular Borromean rings .
It is referred to simply as the potential in physics, or the force field in chemistry. The first equation comes from Newton's laws of motion ; the force F {\displaystyle F} acting on each particle in the system can be calculated as the negative gradient of U ( X ) {\displaystyle U(X)} .
The bond length, or the minimum separating distance between two atoms participating in bond formation, is determined by their repulsive and attractive forces along the internuclear direction. [3] As the two atoms get closer and closer, the positively charged nuclei repel, creating a force that attempts to push the atoms apart.
A force field is used to minimize the bond stretching energy of this ethane molecule. Molecular mechanics uses classical mechanics to model molecular systems. The Born–Oppenheimer approximation is assumed valid and the potential energy of all systems is calculated as a function of the nuclear coordinates using force fields. Molecular ...
A hydrogen bond is an extreme form of dipole-dipole bonding, referring to the attraction between a hydrogen atom that is bonded to an element with high electronegativity, usually nitrogen, oxygen, or fluorine. [4] The hydrogen bond is often described as a strong electrostatic dipole–dipole interaction.
At appreciable temperatures, many of these new motional modes are excited, resulting in constant motion as seen above. Molecular physics is the study of the physical properties of molecules and molecular dynamics. The field overlaps significantly with physical chemistry, chemical physics, and quantum chemistry.
In conventional chemical synthesis or chemosynthesis, reactive molecules encounter one another through random thermal motion in a liquid or vapor. In a hypothesized process of mechanosynthesis, reactive molecules would be attached to molecular mechanical systems, and their encounters would result from mechanical motions bringing them together ...
This hydrogen bond leads a string of acetic acid molecules hydrogen bonding to minimize free energy. [ 10 ] [ 26 ] These strings of acetic acid molecules then stack together to build solids. The halogen bonding between the bromine and 1,4-dioxane molecules partially guides the organization of the crystal lattice structure.