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G-quadruplex structures can be computationally predicted from DNA or RNA sequence motifs, [11] [12] but their actual structures can be quite varied within and between the motifs, which can number over 100,000 per genome. Their activities in basic genetic processes are an active area of research in telomere, gene regulation, and functional ...
Altimetry data from the SWOT mission will make it possible to measure the 3-dimensional shape of flood waves, track floodwater levels, and improve measurements of local topographic details in floodplains. All of these will improve prediction capabilities for future floods. Coastal ocean dynamics
RaptorX is the successor to the RAPTOR protein structure prediction system. RAPTOR was designed and developed by Dr. Jinbo Xu and Dr. Ming Li at the University of Waterloo. RaptorX was designed and developed by a research group led by Prof. Jinbo Xu at the Toyota Technological Institute branch at Chicago.
This list of protein subcellular localisation prediction tools includes software, databases, and web services that are used for protein subcellular localization prediction. Some tools are included that are commonly used to infer location through predicted structural properties, such as signal peptide or transmembrane helices , and these tools ...
Three-dimensional structure of a protein. Structural bioinformatics is the branch of bioinformatics that is related to the analysis and prediction of the three-dimensional structure of biological macromolecules such as proteins, RNA, and DNA. It deals with generalizations about macromolecular 3D structures such as comparisons of overall folds ...
List of notable protein secondary structure prediction programs. Name Method description Type Link Initial release RaptorX-SS8
The Swiss-model Workspace integrates programs and databases required for protein structure prediction and modelling in a web-based workspace. Depending on the complexity of the modelling task, different modes of use can be applied, in which the user has different levels of control over individual modelling steps: automated mode, alignment mode, and project mode.
The three final output nodes deliver a score for each secondary structure element for the central position of the window. Using the secondary structure with the highest score, PSIPRED generates the protein prediction. [9] The Q3 value is the fraction of residues predicted correctly in the secondary structure states, namely helix, strand, and ...