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In this tree, the lowest common ancestor of the nodes x and y is marked in dark green. Other common ancestors are shown in light green. In graph theory and computer science, the lowest common ancestor (LCA) (also called least common ancestor) of two nodes v and w in a tree or directed acyclic graph (DAG) T is the lowest (i.e. deepest) node that has both v and w as descendants, where we define ...
In computer science, Tarjan's off-line lowest common ancestors algorithm is an algorithm for computing lowest common ancestors for pairs of nodes in a tree, based on the union-find data structure. The lowest common ancestor of two nodes d and e in a rooted tree T is the node g that is an ancestor of both d and e and that has the greatest depth ...
Range minimum query reduced to the lowest common ancestor problem.. Given an array A[1 … n] of n objects taken from a totally ordered set, such as integers, the range minimum query RMQ A (l,r) =arg min A[k] (with 1 ≤ l ≤ k ≤ r ≤ n) returns the position of the minimal element in the specified sub-array A[l …
All of the following problems can be solved in O(Prefix sum(n)) (the time it takes to solve the prefix sum problem in parallel for a list of n items): Classifying advance and retreat edges: Do list ranking on the ETR and save the result in a two-dimensional array A. Then (u,v) is an advance edge iff A(u,v) < A(v,u), and a retreat edge otherwise.
The level ancestor query LA(v,d) requests the ancestor of node v at depth d, where the depth of a node v in a tree is the number of edges on the shortest path from the root of the tree to node v. It is possible to solve this problem in constant time per query, after a preprocessing algorithm that takes O( n ) and that builds a data structure ...
If the tree is traversed from the bottom up with a bit vector telling which strings are seen below each node, the k-common substring problem can be solved in () time. If the suffix tree is prepared for constant time lowest common ancestor retrieval, it can be solved in () time. [2]
A logarithmic unit is a unit that can be used to express a quantity (physical or mathematical) on a logarithmic scale, that is, as being proportional to the value of a logarithm function applied to the ratio of the quantity and a reference quantity of the same type. The choice of unit generally indicates the type of quantity and the base of the ...
Based on a BLAST comparison against a reference database, this tool performs both taxonomic and functional binning, by placing the reads onto the nodes of the NCBI taxonomy using a simple lowest common ancestor (LCA) algorithm or onto the nodes of the SEED or KEGG classifications, respectively.