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A Jupyter Notebook document is a JSON file, following a versioned schema, usually ending with the ".ipynb" extension. The main parts of the Jupyter Notebooks are: Metadata, Notebook format and list of cells. Metadata is a data Dictionary of definitions to set up and display the notebook. Notebook Format is a version number of the software.
BioJupies is a web-based platform that provides complete RNA-seq analysis solution from free alignment service to a complete data analysis report delivered as an interactive Jupyter Notebook. BioQueue is a web-based queue engine designed preferentially to improve the efficiency and robustness of job execution in bioinformatics research by ...
CSV is a delimited text file that uses a comma to separate values (many implementations of CSV import/export tools allow other separators to be used; for example, the use of a "Sep=^" row as the first row in the *.csv file will cause Excel to open the file expecting caret "^" to be the separator instead of comma ","). Simple CSV implementations ...
The findgen function in the above example returns a one-dimensional array of floating point numbers, with values equal to a series of integers starting at 0.. Note that the operation in the second line applies in a vectorized manner to the whole 100-element array created in the first line, analogous to the way general-purpose array programming languages (such as APL, J or K) would do it.
The model is devised on the basis of active shape model, but uses centripetal Catmull-Rom spline to join two successive points (active shape model uses simple straight line), so that the total number of points necessary to depict a shape is less. The use of centripetal Catmull-Rom spline makes the training of a shape model much simpler, and it ...
The method consists of plotting the explained variation as a function of the number of clusters and picking the elbow of the curve as the number of clusters to use. The same method can be used to choose the number of parameters in other data-driven models, such as the number of principal components to describe a data set.
Set x to an all-zero vector of dimension n. Set w = A T (y − Ax). Let w R denote the sub-vector with indexes from R; Main loop: while R ≠ ∅ and max(w R) > ε: Let j in R be the index of max(w R) in w. Add j to P. Remove j from R. Let A P be A restricted to the variables included in P. Let s be vector of same length as x.
Scatterplot of the data set. The Iris flower data set or Fisher's Iris data set is a multivariate data set used and made famous by the British statistician and biologist Ronald Fisher in his 1936 paper The use of multiple measurements in taxonomic problems as an example of linear discriminant analysis. [1]