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Each value in the matrix is calculated by dividing the frequency of occurrence of the amino acid pair in the BLOCKS database, clustered at the 62% level, divided by the probability that the same two amino acids might align by chance. The ratio is then converted to a logarithm and expressed as a log odds score, as for PAM.
An odds ratio (OR) is a statistic that quantifies the strength of the association between two events, A and B. The odds ratio is defined as the ratio of the odds of event A taking place in the presence of B, and the odds of A in the absence of B. Due to symmetry, odds ratio reciprocally calculates the ratio of the odds of B occurring in the presence of A, and the odds of B in the absence of A.
For a continuous independent variable the odds ratio can be defined as: The image represents an outline of what an odds ratio looks like in writing, through a template in addition to the test score example in the "Example" section of the contents. In simple terms, if we hypothetically get an odds ratio of 2 to 1, we can say...
The name Log5 is due to Bill James [1] but the method of using odds ratios in this way dates back much farther. This is in effect a logistic rating model and is therefore equivalent to the Bradley–Terry model used for paired comparisons , the Elo rating system used in chess and the Rasch model used in the analysis of categorical data.
Similarly, likelihoods are often transformed to the log scale, and the corresponding log-likelihood can be interpreted as the degree to which an event supports a statistical model. The log probability is widely used in implementations of computations with probability, and is studied as a concept in its own right in some applications of ...
The log diagnostic odds ratio can also be used to study the trade-off between sensitivity and specificity [5] [6] by expressing the log diagnostic odds ratio in terms of the logit of the true positive rate (sensitivity) and false positive rate (1 − specificity), and by additionally constructing a measure, :
Step three: Divide your monthly debts by your monthly gross income For this example, divide your monthly debt payments ($2,400) by your total monthly gross income ($6,000). In this case, your ...
The simplest measure of association for a 2 × 2 contingency table is the odds ratio. Given two events, A and B, the odds ratio is defined as the ratio of the odds of A in the presence of B and the odds of A in the absence of B, or equivalently (due to symmetry), the ratio of the odds of B in the presence of A and the odds of B in the absence of A.