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  2. Biopython - Wikipedia

    en.wikipedia.org/wiki/Biopython

    A core concept in Biopython is the biological sequence, and this is represented by the Seq class. [11] A Biopython Seq object is similar to a Python string in many respects: it supports the Python slice notation, can be concatenated with other sequences and is immutable. In addition, it includes sequence-specific methods and specifies the ...

  3. MayaVi - Wikipedia

    en.wikipedia.org/wiki/MayaVi

    can be imported as a Python module from other Python programs or can be scripted from the Python interpreter; supports volume visualization of data via texture and ray cast mappers; support for any VTK dataset using the VTK data format; support for PLOT3D data; multiple datasets can be used simultaneously

  4. List of file formats - Wikipedia

    en.wikipedia.org/wiki/List_of_file_formats

    MEI – Music Encoding Initiative file format that attempts to encode all musical notations; MIDI – MIDI file format that is a music sheet for instruments; MUS, MUSX – Finale sheet music file; MXL, XML – MusicXML standard sheet music exchange format; MSCX, MSCZ – MuseScore sheet music file; SMDL – Standard Music Description Language ...

  5. Protein Data Bank (file format) - Wikipedia

    en.wikipedia.org/.../Protein_Data_Bank_(file_format)

    Its fixed-column width format is limited to 80 or 140 [4] columns, which was based on the width of the computer punch cards that were previously used to exchange the coordinates. [5] Through the years the file format has undergone many changes and revisions. The final update to the PDB file format was in November 2012 with version 3.30. [6]

  6. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    A computer-assisted design (CAD) tool for synthetic biology, used to design genetic constructs based on grammar rules. Linux, macOS, Windows: Apache License 2.0 GenoCAD Team (Virginia Bioinformatics Institute) Genomespace: Centralized web application that provides data format transformations and facilitates connections with other bioinformatics ...

  7. Python (programming language) - Wikipedia

    en.wikipedia.org/wiki/Python_(programming_language)

    Since 7 October 2024, Python 3.13 is the latest stable release, and it and, for few more months, 3.12 are the only releases with active support including for bug fixes (as opposed to just for security) and Python 3.9, [55] is the oldest supported version of Python (albeit in the 'security support' phase), due to Python 3.8 reaching end-of-life.

  8. Python Imaging Library - Wikipedia

    en.wikipedia.org/wiki/Python_Imaging_Library

    Python Imaging Library is a free and open-source additional library for the Python programming language that adds support for opening, manipulating, and saving many different image file formats. It is available for Windows, Mac OS X and Linux. The latest version of PIL is 1.1.7, was released in September 2009 and supports Python 1.5.2–2.7. [3]

  9. SAM (file format) - Wikipedia

    en.wikipedia.org/wiki/SAM_(file_format)

    The SAM format consists of a header and an alignment section. [1] The binary equivalent of a SAM file is a Binary Alignment Map (BAM) file, which stores the same data in a compressed binary representation. [4] SAM files can be analysed and edited with the software SAMtools. [1] The header section must be prior to the alignment section if it is ...