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Most Ensembl Genomes data is stored in MySQL relational databases and can be accessed by the Ensembl REST interface, the Perl API, Biomart or online. [5] Ensembl Genomes is an open project, and most of the code, tools, and data are available to the public. [6] Ensembl and Ensembl Genomes software uses an Apache 2.0 license [7] license.
Open Source (Apache License Version 2.0) Apache Ignite is an in-memory computing platform that is durable, strongly consistent, and highly available with powerful SQL, key-value and processing APIs. With full SQL support, one of the main use cases for Apache Ignite is the in-memory database which scales horizontally and provides ACID transactions.
The Ensembl website provides extensive information on how to install and use the API. This software can be used to access the public MySQL database, avoiding the need to download enormous datasets. The users could even choose to retrieve data from the MySQL with direct SQL queries, but this requires an extensive knowledge of the current ...
Ensembl: provides automatic annotation databases for human, mouse, other vertebrate and eukaryote genomes Ensembl Genomes : provides genome-scale data for bacteria, protists, fungi, plants and invertebrate metazoa, through a unified set of interactive and programmatic interfaces (using the Ensembl software platform)
The web server or database management system also varies. LEMP is a version where Apache has been replaced with the more lightweight web server Nginx. [6] A version where MySQL has been replaced by PostgreSQL is called LAPP, or sometimes by keeping the original acronym, LAMP (Linux / Apache / Middleware (Perl, PHP, Python, Ruby) / PostgreSQL). [7]
MySQL (/ ˌ m aɪ ˌ ɛ s ˌ k juː ˈ ɛ l /) [5] is an open-source relational database management system (RDBMS). [5] [6] Its name is a combination of "My", the name of co-founder Michael Widenius's daughter My, [7] and "SQL", the acronym for Structured Query Language.
MySQL Cluster is implemented through the NDB or NDBCLUSTER storage engine for MySQL ("NDB" stands for Network Database). MySQL Federated – allows a user to create a table that is a local representation of a foreign (remote) table. It utilizes the MySQL client library API as a data transport, treating the remote data source the same way other ...
Anaconda is an open source [9] [10] data science and artificial intelligence distribution platform for Python and R programming languages.Developed by Anaconda, Inc., [11] an American company [1] founded in 2012, [11] the platform is used to develop and manage data science and AI projects. [9]