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Most Ensembl Genomes data is stored in MySQL relational databases and can be accessed by the Ensembl REST interface, the Perl API, Biomart or online. [5] Ensembl Genomes is an open project, and most of the code, tools, and data are available to the public. [6] Ensembl and Ensembl Genomes software uses an Apache 2.0 license [7] license.
This is a list of commands from the GNU Core Utilities for Unix environments. These commands can be found on Unix operating systems and most Unix-like operating systems. GNU Core Utilities include basic file, shell and text manipulation utilities. Coreutils includes all of the basic command-line tools that are expected in a POSIX system.
MySQL (/ ˌ m aɪ ˌ ɛ s ˌ k juː ˈ ɛ l /) [5] is an open-source relational database management system (RDBMS). [5] [6] Its name is a combination of "My", the name of co-founder Michael Widenius's daughter My, [7] and "SQL", the acronym for Structured Query Language.
In the Ensembl project, sequence data are fed into the gene annotation system (a collection of software "pipelines" written in Perl) which creates a set of predicted gene locations and saves them in a MySQL database for subsequent analysis and display. Ensembl makes these data freely accessible to the world research community.
Linux is a Unix-like computer operating system assembled under the model of free and open-source software development and distribution. Most Linux distributions, as collections of software based around the Linux kernel and often around a package management system, provide complete LAMP setups through
MariaDB is a community-developed, commercially supported fork of the MySQL relational database management system (RDBMS), intended to remain free and open-source software under the GNU General Public License.
It was developed by MySQL AB, and enables users to graphically administer MySQL databases and visually design database structures. Adminer – free MySQL front end capable of managing multiple databases, with many CSS skins available. It is a light-weight alternative to phpMyAdmin, distributed under the Apache license (or GPL v2) as a single ...
Percona Server for MySQL is an open source relational database management system (RDBMS). It is a free, fully compatible drop in replacement for Oracle MySQL . The software includes a number of scalability, availability, security and backup features only available in MySQL's commercial Enterprise edition. [ 2 ]