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  2. List of sequence alignment software - Wikipedia

    en.wikipedia.org/wiki/List_of_sequence_alignment...

    Slider is an application for the Illumina Sequence Analyzer output that uses the "probability" files instead of the sequence files as an input for alignment to a reference sequence or a set of reference sequences. Yes Yes No No [53] [54] 2009-2010 SOAP, SOAP2, SOAP3, SOAP3-dp SOAP: robust with a small (1-3) number of gaps and mismatches.

  3. Lis (linear algebra library) - Wikipedia

    en.wikipedia.org/wiki/Lis_(linear_algebra_library)

    Lis (Library of Iterative Solvers for linear systems; pronounced lis]) is a scalable parallel software library to solve discretized linear equations and eigenvalue problems that mainly arise from the numerical solution of partial differential equations using iterative methods.

  4. Comparison of linear algebra libraries - Wikipedia

    en.wikipedia.org/wiki/Comparison_of_linear...

    High-performance multi-threaded primitives for large sparse matrices. Support operations for iterative solvers: multiplication, triangular solve, scaling, matrix I/O, matrix rendering. Many variants: e.g.: symmetric, hermitian, complex, quadruple precision. oneMKL: Intel C, C++, Fortran 2003 2023.1 / 03.2023 Non-free Intel Simplified Software ...

  5. List of numerical libraries - Wikipedia

    en.wikipedia.org/wiki/List_of_numerical_libraries

    The choice of a typical library depends on a range of requirements such as: desired features (e.g. large dimensional linear algebra, parallel computation, partial differential equations), licensing, readability of API, portability or platform/compiler dependence (e.g. Linux, Windows, Visual C++, GCC), performance, ease-of-use, continued support ...

  6. List of computer algebra systems - Wikipedia

    en.wikipedia.org/wiki/List_of_computer_algebra...

    The following tables provide a comparison of computer algebra systems (CAS). [1] [2] [3] A CAS is a package comprising a set of algorithms for performing symbolic manipulations on algebraic objects, a language to implement them, and an environment in which to use the language.

  7. List of alignment visualization software - Wikipedia

    en.wikipedia.org/wiki/List_of_alignment...

    The fourth is a great example of how interactive graphical tools enable a worker involved in sequence analysis to conveniently execute a variety if different computational tools to explore an alignment's phylogenetic implications; or, to predict the structure and functional properties of a specific sequence, e.g., comparative modelling.

  8. List of finite element software packages - Wikipedia

    en.wikipedia.org/wiki/List_of_finite_element...

    It is an Open Source FEA project. The solver uses a partially compatible ABAQUS file format. The pre/post-processor generates input data for many FEA and CFD applications: Guido Dhondt, Klaus Wittig: 2.20: 2022-08-01: GNU GPL: Free: Linux, Windows: DIANA FEA

  9. List of mathematical series - Wikipedia

    en.wikipedia.org/wiki/List_of_mathematical_series

    This list of mathematical series contains formulae for finite and infinite sums. It can be used in conjunction with other tools for evaluating sums. It can be used in conjunction with other tools for evaluating sums.