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  2. Just another Gibbs sampler - Wikipedia

    en.wikipedia.org/wiki/Just_another_Gibbs_sampler

    Just another Gibbs sampler (JAGS) is a program for simulation from Bayesian hierarchical models using Markov chain Monte Carlo (MCMC), developed by Martyn Plummer. JAGS has been employed for statistical work in many fields, for example ecology, management, and genetics.

  3. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    Unix-like: Academic Free: Collaborative project GenePattern: Scientific workflow system that provides access to hundreds of genomic analysis tools Unix-like (public server); Linux, macOS, Windows: MIT: Broad Institute, UC San Diego: Geworkbench: Genomic data integration platform Linux, macOS, Windows: GeWorkbench License [5] Columbia University ...

  4. List of statistical software - Wikipedia

    en.wikipedia.org/wiki/List_of_statistical_software

    It is somewhat like BUGS, but with a different language for expressing models and a different sampler for sampling from their posteriors statsmodels – Python package for statistics and econometrics (regression, plotting, hypothesis testing, generalized linear model (GLM), time series analysis , autoregressive–moving-average model (ARMA ...

  5. List of free geology software - Wikipedia

    en.wikipedia.org/wiki/List_of_free_geology_software

    This is a list of free and open-source software for geological data handling and interpretation. The list is split into broad categories, depending on the intended use of the software and its scope of functionality. Notice that 'free and open-source' requires that the source code is available and users are given a free software license.

  6. List of computer simulation software - Wikipedia

    en.wikipedia.org/wiki/List_of_computer...

    AnyLogic - a multi-method simulation modeling tool for business and science. Developed by The AnyLogic Company. APMonitor - a tool for dynamic simulation, validation, and optimization of multi-domain systems with interfaces to Python and MATLAB. Arena - a flowchart-based discrete event simulation software developed by Rockwell Automation

  7. List of free electronics circuit simulators - Wikipedia

    en.wikipedia.org/wiki/List_of_free_electronics...

    The following table is split into two groups based on whether it has a graphical visual interface or not. The latter requires a separate program to provide that feature, such as Qucs-S, [1] Oregano, [2] or a schematic design application that supports external simulators, such as KiCad or gEDA.

  8. Comparison of software for molecular mechanics modeling

    en.wikipedia.org/wiki/Comparison_of_software_for...

    OPLS-AA, MMFF, GBSA solvent model, conformational sampling, minimizing, MD. Includes the Maestro GUI which provides visualizing, molecule building, calculation setup, job launch and monitoring, project-level organizing of results, access to a suite of other modelling programs. Proprietary: Schrödinger: MAPS [4] Yes Yes Yes Yes Yes Yes Yes No Yes

  9. List of free and open-source software packages - Wikipedia

    en.wikipedia.org/wiki/List_of_free_and_open...

    This is a list of free and open-source software packages, computer software licensed under free software licenses and open-source licenses. Software that fits the Free Software Definition may be more appropriately called free software ; the GNU project in particular objects to their works being referred to as open-source . [ 1 ]