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Tide is a tool to identify peptides from tandem mass spectra. It is an independent re-implementation of the SEQUEST algorithm, which identifies peptides by comparing the observed spectra to a catalog of theoretical spectra derived in silico from a database of known proteins.
A peptide spectral library is a curated, annotated and non-redundant collection/database of LC-MS/MS peptide spectra. One essential utility of a peptide spectral library is to serve as consensus templates supporting the identification of peptides and proteins based on the correlation between the templates with experimental spectra. [citation ...
Mass spectrometry is a scientific technique for measuring the mass-to-charge ratio of ions. It is often coupled to chromatographic techniques such as gas-or liquid chromatography and has found widespread adoption in the fields of analytical chemistry and biochemistry where it can be used to identify and characterize small molecules and proteins ().
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Specctra is a commercial PCB auto-router originally developed by John F. Cooper and David Chyan of Cooper & Chyan Technology, Inc. (CCT) in 1989. [2] The company and product were taken over by Cadence Design Systems in May 1997.
SIRIUS is a Java-based open-source software for the identification of small molecules from fragmentation mass spectrometry data without the use of spectral libraries. It combines the analysis of isotope patterns in MS1 spectra with the analysis of fragmentation patterns in MS2 spectra.
JCAMP-DX are text-based file formats created by JCAMP for storing spectroscopic data. It started as a file format for Infrared spectroscopy. [1] It was later expanded to cover Nuclear magnetic resonance spectroscopy, [2] mass spectrometry, [3] electron magnetic resonance [4] and circular dichroism spectroscopy. [5]
Gemologists frequently use spectroscopes to determine the absorption spectra of gemstones, thereby allowing them to make inferences about what kind of gem they are examining. [9] A gemologist may compare the absorption spectrum they observe with a catalogue of spectra for various gems to help narrow down the exact identity of the gem.