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KEGG (Kyoto Encyclopedia of Genes and Genomes) is a collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances.KEGG is utilized for bioinformatics research and education, including data analysis in genomics, metagenomics, metabolomics and other omics studies, modeling and simulation in systems biology, and translational research in drug development.
International Human Epigenome Consortium: [28] integrates epigenomic reference data from well-known national endeavors such as the Canadian CEEHRC, [29] European Blueprint, [30] European Genome-phenome Archive (EGA [31]), US ENCODE and NIH Roadmap, German DEEP, [32] Japanese CREST, [33] Korean KNIH, Singapore's GIS and China's EpiHK [34]
Gramene [17] is an online web database resource for plant comparative genomics and pathway analysis based on Ensembl technology. Plant Genome DataBase Japan [18] (PGDBj) is a website that contains information related to genomes of model and crop plants from databases. It has three main components: ortholog db, DNA marker and linkage map db, and ...
Oryza glaberrima (African rice) var CG14: Poaceae: West-African species of rice: 2010 [209] Oryza rufipogon (red rice) Poaceae: Ancestor to Oryza sativa: 406 Mb: 37,071: SIBS: 2012 [210] Illumina HiSeq2000 100x coverage Oryza sativa (long grain rice) ssp indica: Poaceae: Crop and model cereal: 430 Mb [211] International Rice Genome Sequencing ...
The DNA Data Bank of Japan (DDBJ) is a biological database that collects DNA sequences. [ 1 ] [ 2 ] It is located at the National Institute of Genetics (NIG) in the Shizuoka prefecture of Japan. It is also a member of the International Nucleotide Sequence Database Collaboration or INSDC .
The International Rice Genebank holds more than 127,000 accessions of rice and wild relatives and is the biggest collection of rice genetic diversity in the world. [ 25 ] [ 26 ] The International Network for Genetic Evaluation of Rice (INGER) was created by IRRI in 1975 as the International Rice Testing Program IRTP. [ 27 ]
The rice and the wheat genomes, for example, can have 4-6 copies of whole genomes [29] whereas animals typically only have 2 . These duplicated genes may pose a problem for the de novo assembly of sequence fragments, because repeat sequences confuse the computer programs when trying to put the fragments together, and they can be difficult to ...
The National Institute of Genetics ("Japanese Institute of Genetics") is a Japanese institution founded in 1949. [1] It hosts the DNA Data Bank of Japan.