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  2. Yeast deletion project - Wikipedia

    en.wikipedia.org/wiki/Yeast_deletion_project

    The yeast deletion project, formally the Saccharomyces Genome Deletion Project, is a project to create data for a near-complete collection of gene-deletion mutants of the yeast Saccharomyces cerevisiae. Each strain carries a precise deletion of one of the genes in the genome. This allows researchers to determine what each gene does by comparing ...

  3. Synthetic genetic array - Wikipedia

    en.wikipedia.org/wiki/Synthetic_genetic_array

    Synthetic genetic array analysis is generally conducted using colony arrays on petriplates at standard densities (96, 384, 768, 1536). To perform a SGA analysis in S.cerevisiae, the query gene deletion is crossed systematically with a deletion mutant array (DMA) containing every viable knockout ORF of the yeast genome (currently 4786 strains). [9]

  4. Cycloheximide chase - Wikipedia

    en.wikipedia.org/wiki/Cycloheximide_chase

    In yeast, deletion strains are frequently used to assess protein stability over time with cycloheximide chases. For example, yeast strains lacking critical degradation machinery such as chaperones, E3 ligases, and vacuolar proteins are often used to determine the mechanism of degradation for a protein substrate of interest.

  5. Delitto perfetto - Wikipedia

    en.wikipedia.org/wiki/Delitto_perfetto

    Delitto perfetto (Italian: [deˈlitto perˈfɛtto]) is a genetic technique for in vivo site-directed mutagenesis in yeast. This name is the Italian term for "perfect murder", and it refers to the ability of the technique to create desired genetic changes without leaving any foreign DNA in the genome.

  6. Double-strand break repair model - Wikipedia

    en.wikipedia.org/wiki/Double-strand_break_repair...

    Afterwards, the 3’ ssDNA invades the template DNA, and displaces a DNA strand to form a D-loop. DNA polymerase and other accessory factors follows by replacing the missing DNA via DNA synthesis. Ligase then attaches the DNA strand break, [10] resulting in the formation of 2 Holliday junctions. The recombined DNA strands then undergoes ...

  7. Cre-Lox recombination - Wikipedia

    en.wikipedia.org/wiki/Cre-Lox_recombination

    A classical strategy for generating gene deletion variants is based on double cross-integration of non-replicating vectors into the genome. Furthermore, recombination systems such as Cre-lox are widely used, mostly in eukaryotes. The versatile properties of Cre recombinase make it ideal for use in many genetic engineering strategies.

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  9. Flux balance analysis - Wikipedia

    en.wikipedia.org/wiki/Flux_balance_analysis

    In biochemistry, flux balance analysis (FBA) is a mathematical method for simulating the metabolism of cells or entire unicellular organisms, such as E. coli or yeast, using genome-scale reconstructions of metabolic networks. Genome-scale reconstructions describe all the biochemical reactions in an organism based on its entire genome.