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Reactome is a free online database of biological pathways. [ 1 ] [ 2 ] [ 3 ] It is manually curated and authored by PhD-level biologists, in collaboration with Reactome editorial staff. The content is cross-referenced to many bioinformatics databases.
The papers introducing the ranking have been quoted extensively by authors working in Bibliometrics and Scientometrics.For example, reference [3] describing an update to the methodology of this index number is cited [12] from authors publishing in journals such as SAGE's Research on Social Work Practice, [10] Elsevier's Perspectives in Ecology and Conservation, [13] Springer's Forensic Science ...
Provides an RDF data set about scientific publications and related entities, such as authors, institutions, journals, and fields of study. The data set is based on the Microsoft Academic Graph. [105] [106] Free University of Freiburg: MyScienceWork: Science Database includes more than 70 million scientific publications and 12 million patents. Free
WikiPathways is originally built using MediaWiki software, [4] a custom graphical pathway editing tool (PathVisio [5]) and integrated BridgeDb [6] databases covering major gene, protein, and metabolite systems. WikiPathways was founded in 2008 by Thomas Kelder, Alex Pico, Martijn Van Iersel, Kristina Hanspers, Bruce Conklin and Chris Evelo.
Biological databases are stores of biological information. [1] The journal Nucleic Acids Research regularly publishes special issues on biological databases and has a list of such databases. The 2018 issue has a list of about 180 such databases and updates to previously described databases. [2] Omics Discovery Index can be used to browse and search
Using the web-interface of the database, one can perform overrepresentation analysis, based on biochemical pathways or on neighbourhood-based entity sets (NESTs) that constitute sub-networks of the overall interaction network containing all physical entities around a central one within a "radius" (number of interactions from the center).
The NCBI houses a series of databases relevant to biotechnology and biomedicine and is an important resource for bioinformatics tools and services. Major databases include GenBank for DNA sequences and PubMed, a bibliographic database for biomedical literature. Other databases include the NCBI Epigenomics database.
Elsevier BIOBASE is a bibliographic database covering all topics pertaining to biological research throughout the world. It was established in the 1950s in print format as Current Awareness in Biological Sciences. Temporal coverage is from 1994 to the present. The database has over 4.1 million records as of December 2008.