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Bifurcated H-bond systems are common in alpha-helical transmembrane proteins between the backbone amide C=O of residue i as the H-bond acceptor and two H-bond donors from residue i + 4: the backbone amide N−H and a side-chain hydroxyl or thiol H +. The energy preference of the bifurcated H-bond hydroxyl or thiol system is -3.4 kcal/mol or -2. ...
The limiting acid in a given solvent is the solvonium ion, such as H 3 O + ion in water.An acid which has more of a tendency to donate a hydrogen ion than the limiting acid will be a strong acid in the solvent considered, and will exist mostly or entirely in its dissociated form.
The lone electron pair on the nitrogen atom (N) in ammonia, represented as a line above the N, forms a coordinate bond with a proton (H +). After that, all four N−H bonds are equivalent, being polar covalent bonds. The ion has a tetrahedral structure and is isoelectronic with methane and the borohydride anion.
In primary and secondary amides, the presence of N–H dipoles allows amides to function as H-bond donors as well. Thus amides can participate in hydrogen bonding with water and other protic solvents; the oxygen atom can accept hydrogen bonds from water and the N–H hydrogen atoms can donate H-bonds. As a result of interactions such as these ...
The structure of the molecule of urea is O=C(−NH 2) 2.The urea molecule is planar when in a solid crystal because of sp 2 hybridization of the N orbitals. [8] [9] It is non-planar with C 2 symmetry when in the gas phase [10] or in aqueous solution, [9] with C–N–H and H–N–H bond angles that are intermediate between the trigonal planar angle of 120° and the tetrahedral angle of 109.5°.
The hazards of ammonia solutions depend on the concentration: 'dilute' ammonia solutions are usually 5–10% by weight (< 5.62 mol/L); 'concentrated' solutions are usually prepared at >25% by weight. A 25% (by weight) solution has a density of 0.907 g/cm 3 , and a solution that has a lower density will be more concentrated.
ML n H n− ⇌ ML n (n+1)− + H − Since hydride does not exist as a stable anion in solution, this equilibrium constant (and its associated free energy) are calculated from measurable equilibria. The reference point is the hydricity of a proton, which in acetonitrile solution is calculated at −76 kcal mol −1 : [ 10 ]
The pair of shared electrons forms a single covalent bond. The electron density of these two bonding electrons in the region between the two atoms increases from the density of two non-interacting H atoms. Two p-orbitals forming a pi-bond. A double bond has two shared pairs of electrons, one in a sigma bond and one in a pi bond with electron ...